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The annotation and conditions in this rule are derived from the following entries: P55135 (RLMD_ECOLI)

If a protein meets these conditions... i

Common conditions

Special conditions

    • Subsequence at position 162 - 162 aligns to "C" in entry P55135 Subsequence at position 90 - 90 aligns to "C" in entry P55135 Subsequence at position 87 - 87 aligns to "C" in entry P55135 Subsequence at position 81 - 81 aligns to "C" in entry P55135
    • Subsequence at position 342 - 342 aligns to "[ND]" in entry P55135 (individually applies "S-adenosyl-L-methionine")
    • Subsequence at position 389 - 389 aligns to "C" in entry P55135 (individually applies "Nucleophile")
    • Subsequence at position 363 - 363 aligns to "D" in entry P55135 (individually applies "S-adenosyl-L-methionine")
    • Subsequence at position 315 - 315 aligns to "E" in entry P55135 (individually applies "S-adenosyl-L-methionine")
    • Subsequence at position 299 - 299 aligns to "N" in entry P55135 (individually applies "S-adenosyl-L-methionine")
    • Subsequence at position 294 - 294 aligns to "F" in entry P55135 (individually applies "S-adenosyl-L-methionine; via carbonyl oxygen")
    • Subsequence at position 265 - 265 aligns to "Q" in entry P55135 (individually applies "S-adenosyl-L-methionine")
  • Subsequence at position 162 - 162 aligns to "C" in entry P55135 (applies "Iron-sulfur (4Fe-4S)") Subsequence at position 90 - 90 aligns to "C" in entry P55135 (applies "Iron-sulfur (4Fe-4S)") Subsequence at position 87 - 87 aligns to "C" in entry P55135 (applies "Iron-sulfur (4Fe-4S)") Subsequence at position 81 - 81 aligns to "C" in entry P55135 (applies "Iron-sulfur (4Fe-4S)")

... then these annotations are applied i

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namei

  • Recommended name:
    23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD (EC:2.1.1.190)
    Alternative name(s):
    23S rRNA(m5U1939)-methyltransferase

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namei

  • Name:rlmD

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> describes the function(s) of a protein.<p><a href='/help/function' target='_top'>More...</a></p>Functioni

  • Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei

  • S-adenosyl-L-methionine (to residues corresponding to position 342)
  • S-adenosyl-L-methionine (to residues corresponding to position 363)
  • S-adenosyl-L-methionine (to residues corresponding to position 315)
  • S-adenosyl-L-methionine (to residues corresponding to position 299)
  • S-adenosyl-L-methionine; via carbonyl oxygen (to residues corresponding to position 294)
  • S-adenosyl-L-methionine (to residues corresponding to position 265)

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei

  • Nucleophile (to residues corresponding to position 389)

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi

  • Iron-sulfur (4Fe-4S) (to residues corresponding to position 162)
  • Iron-sulfur (4Fe-4S) (to residues corresponding to position 90)
  • Iron-sulfur (4Fe-4S) (to residues corresponding to position 87)
  • Iron-sulfur (4Fe-4S) (to residues corresponding to position 81)

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO (Gene Ontology) termsi

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