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Protein
Submitted name:

Fox-1-like RNA-binding protein 1 isoform D

Gene

RBFOX1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Fox-1-like RNA-binding protein 1 isoform DImported
Gene namesi
Name:RBFOX1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Interactioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei138Interaction with RNAUniRule annotation1
Sitei146Interaction with RNAUniRule annotation1
Sitei147Interaction with RNAUniRule annotation1
Sitei171Interaction with RNAUniRule annotation1
Sitei176Interaction with RNAUniRule annotation1
Sitei180Interaction with RNAUniRule annotation1
Sitei204Interaction with RNAUniRule annotation1
Sitei214Interaction with RNAUniRule annotation1

Structurei

3D structure databases

ProteinModelPortaliX5DNY3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini137 – 213RRMInterPro annotationAdd BLAST77

Phylogenomic databases

eggNOGiKOG0125 Eukaryota
ENOG4111WJT LUCA

Family and domain databases

CDDicd12407 RRM_FOX1_like, 1 hit
Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR025670 Fox-1_C_dom
IPR034237 FOX1_RRM
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR017325 RNA-bd_Fox-1
IPR000504 RRM_dom
PfamiView protein in Pfam
PF12414 Fox-1_C, 1 hit
PF00076 RRM_1, 1 hit
PIRSFiPIRSF037932 Ataxin_2_bd_A2BP, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit

Sequencei

Sequence statusi: Fragment.

X5DNY3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLASQGVLLH PYGVPMIVPA APYLPGLIQG NQEAAAAPDT MAQPYASAQF
60 70 80 90 100
APPQNGIPAE YTAPHPHPAP EYTGQTTVPE HTLNLYPPAQ THSEQSPADT
110 120 130 140 150
SAQTVSGTAT QTDDAAPTDG QPQTQPSENT ENKSQPKRLH VSNIPFRFRD
160 170 180 190 200
PDLRQMFGQF GKILDVEIIF NERGSKGFGF VTFENSADAD RAREKLHGTV
210 220 230 240 250
VEGRKIEVNN ATARVMTNKK TVNPYTNGWK LNPVVGAVYS PEFYAGTVLL
260 270 280 290 300
CQANQEGSSM YSAPSSLVYT SAMPGFPYPA ATAAAAYRGA HLRGRGRTVY
310 320 330 340 350
NTFRAAAPPP PIPAYGGVVY QDGFYGADIY GGYAAYRYAQ PTPATAAAYS
360 370 380 390 400
DSYGRVYAAD PYHHALAPAP TYGVGAMNAF APLTDAKTRS HADDVGLVLS
410
SLQASIYRGG YNRFAPY
Length:417
Mass (Da):44,653
Last modified:June 11, 2014 - v1
Checksum:i3B90CE9A7B9C5F1E
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei417Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KJ534926 mRNA Translation: AHW56566.1
RefSeqiXP_011520848.1, XM_011522546.2
UniGeneiHs.459842

Genome annotation databases

GeneIDi54715

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KJ534926 mRNA Translation: AHW56566.1
RefSeqiXP_011520848.1, XM_011522546.2
UniGeneiHs.459842

3D structure databases

ProteinModelPortaliX5DNY3
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi54715

Organism-specific databases

CTDi54715

Phylogenomic databases

eggNOGiKOG0125 Eukaryota
ENOG4111WJT LUCA

Miscellaneous databases

ChiTaRSiRBFOX1 human
GenomeRNAii54715

Family and domain databases

CDDicd12407 RRM_FOX1_like, 1 hit
Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR025670 Fox-1_C_dom
IPR034237 FOX1_RRM
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR017325 RNA-bd_Fox-1
IPR000504 RRM_dom
PfamiView protein in Pfam
PF12414 Fox-1_C, 1 hit
PF00076 RRM_1, 1 hit
PIRSFiPIRSF037932 Ataxin_2_bd_A2BP, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiX5DNY3_HUMAN
AccessioniPrimary (citable) accession number: X5DNY3
Entry historyiIntegrated into UniProtKB/TrEMBL: June 11, 2014
Last sequence update: June 11, 2014
Last modified: February 28, 2018
This is version 25 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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