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Entry version 43 (02 Jun 2021)
Sequence version 1 (14 May 2014)
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Protein

Alpha,alpha-trehalose-phosphate synthase (UDP-forming)

Gene

AT1G78580

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosyltransferaseARBA annotation, Transferase

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Alpha,alpha-trehalose-phosphate synthase (UDP-forming)ARBA annotation (EC:2.4.1.15ARBA annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:AT1G78580Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
W8PVS8, baseline and differential

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
W8PVS8

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini93 – 558Glyco_transf_20InterPro annotationAdd BLAST466

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni28 – 57DisorderedSequence analysisAdd BLAST30
Regioni815 – 892DisorderedSequence analysisAdd BLAST78

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi825 – 892Polar residuesSequence analysisAdd BLAST68

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

In the N-terminal section; belongs to the glycosyltransferase 20 family.ARBA annotation

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_002351_0_1_1

Identification of Orthologs from Complete Genome Data

More...
OMAi
MPANKYN

Database of Orthologous Groups

More...
OrthoDBi
772297at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.50.1000, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001830, Glyco_trans_20
IPR036412, HAD-like_sf
IPR023214, HAD_sf
IPR012766, Trehalose_OtsA
IPR003337, Trehalose_PPase

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00982, Glyco_transf_20, 1 hit
PF02358, Trehalose_PPase, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56784, SSF56784, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR02400, trehalose_OtsA, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Fragment.

W8PVS8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPGNKYNCSS SHIPLSRTER LLRDRELREK RKSNRARNPN DVAGSSENSE
60 70 80 90 100
NDLRLEGDSS RQYVEQYLEG AAAAMAHDDA CERQEVRPYN RQRLLVVANR
110 120 130 140 150
LPVSAVRRGE DSWSLEISAG GLVSALLGVK EFEARWIGWA GVNVPDEVGQ
160 170 180 190 200
KALSKALAEK RCIPVFLDEE IVHQYYNGYC NNILWPLFHY LGLPQEDRLA
210 220 230 240 250
TTRSFQSQFA AYKKANQMFA DVVNEHYEEG DVVWCHDYHL MFLPKCLKEY
260 270 280 290 300
NSKMKVGWFL HTPFPSSEIH RTLPSRSELL RSVLAADLVG FHTYDYARHF
310 320 330 340 350
VSACTRILGL EGTPEGVEDQ GRLTRVAAFP IGIDSDRFIR ALEVPEVIQH
360 370 380 390 400
MKELKERFAG RKVMLGVDRL DMIKGIPQKI LAFEKFLEEN ANWRDKVVLL
410 420 430 440 450
QIAVPTRTDV PEYQKLTSQV HEIVGRINGR FGTLTAVPIH HLDRSLDFHA
460 470 480 490 500
LCALYAVTDV ALVTSLRDGM NLVSYEFVAC QEAKKGVLIL SEFAGAAQSL
510 520 530 540 550
GAGAILVNPW NITEVAASIG QALNMTAEER EKRHRHNFHH VKTHTAQEWA
560 570 580 590 600
ETFVSELNDT VIEAQLRISK VPPELPQHDA IQRYSKSNNR LLILGFNATL
610 620 630 640 650
TEPVDNQGRR GDQIKEMDLN LHPELKGPLK ALCSDPSTTI VVLSGSSRSV
660 670 680 690 700
LDKNFGEYDM WLAAENGMFL RLTNGEWMTT MPEHLNMEWV DSVKHVFKYF
710 720 730 740 750
TERTPRSHFE TRDTSLIWNY KYADIEFGRL QARDLLQHLW TGPISNASVD
760 770 780 790 800
VVQGSRSVEV RAVGVTKGAA IDRILGEIVH SKSMTTPIDY VLCIGHFLGK
810 820 830 840 850
DEDVYTFFEP ELPSDMPAIA RSRPSSDSGA KSSSGDRRPP SKSTHNNNKS
860 870 880 890 900
GSKSSSSSNS NNNNKSSQRS LQSERKSGSN HSLGNSRRPS PEKISWNVLD
910 920 930 940
LKGENYFSCA VGRTRTNARY LLGSPDDVVC FLEKLADTTS SP
Length:942
Mass (Da):105,976
Last modified:May 14, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB22AC11EA34CDDDB
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section is used for sequence fragments to indicate that the residue at the extremity of the sequence is not the actual terminal residue in the complete protein sequence.<p><a href='/help/non_ter' target='_top'>More...</a></p>Non-terminal residuei942Imported1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
KJ138926 mRNA Translation: AHL38866.1

NCBI Reference Sequences

More...
RefSeqi
NP_001319403.1, NM_001334832.1
NP_001322931.1, NM_001334833.1
NP_001322932.1, NM_001334834.1
NP_177979.1, NM_106505.5

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G78580.1; AT1G78580.1; AT1G78580
AT1G78580.2; AT1G78580.2; AT1G78580
AT1G78580.3; AT1G78580.3; AT1G78580
AT1G78580.4; AT1G78580.4; AT1G78580

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
844194

Gramene; a comparative resource for plants

More...
Gramenei
AT1G78580.1; AT1G78580.1; AT1G78580
AT1G78580.2; AT1G78580.2; AT1G78580
AT1G78580.3; AT1G78580.3; AT1G78580
AT1G78580.4; AT1G78580.4; AT1G78580

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G78580

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KJ138926 mRNA Translation: AHL38866.1
RefSeqiNP_001319403.1, NM_001334832.1
NP_001322931.1, NM_001334833.1
NP_001322932.1, NM_001334834.1
NP_177979.1, NM_106505.5

3D structure databases

SMRiW8PVS8
ModBaseiSearch...

Genome annotation databases

EnsemblPlantsiAT1G78580.1; AT1G78580.1; AT1G78580
AT1G78580.2; AT1G78580.2; AT1G78580
AT1G78580.3; AT1G78580.3; AT1G78580
AT1G78580.4; AT1G78580.4; AT1G78580
GeneIDi844194
GrameneiAT1G78580.1; AT1G78580.1; AT1G78580
AT1G78580.2; AT1G78580.2; AT1G78580
AT1G78580.3; AT1G78580.3; AT1G78580
AT1G78580.4; AT1G78580.4; AT1G78580
KEGGiath:AT1G78580

Phylogenomic databases

HOGENOMiCLU_002351_0_1_1
OMAiMPANKYN
OrthoDBi772297at2759

Gene expression databases

ExpressionAtlasiW8PVS8, baseline and differential

Family and domain databases

Gene3Di3.40.50.1000, 1 hit
InterProiView protein in InterPro
IPR001830, Glyco_trans_20
IPR036412, HAD-like_sf
IPR023214, HAD_sf
IPR012766, Trehalose_OtsA
IPR003337, Trehalose_PPase
PfamiView protein in Pfam
PF00982, Glyco_transf_20, 1 hit
PF02358, Trehalose_PPase, 1 hit
SUPFAMiSSF56784, SSF56784, 1 hit
TIGRFAMsiTIGR02400, trehalose_OtsA, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiW8PVS8_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: W8PVS8
Secondary accession number(s): A0A178WG51
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 14, 2014
Last sequence update: May 14, 2014
Last modified: June 2, 2021
This is version 43 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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