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Protein
Submitted name:

Hepatocyte nuclear factor 3-beta

Gene

foxa2

Organism
Ictalurus punctatus (Channel catfish) (Silurus punctatus)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi135 – 229Fork-headPROSITE-ProRule annotationAdd BLAST95

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Hepatocyte nuclear factor 3-betaImported
Submitted name:
hepatocyte nuclear factor 3-gammaImported
Gene namesi
Name:foxa2Imported
Synonyms:foxa3Imported
OrganismiIctalurus punctatus (Channel catfish) (Silurus punctatus)Imported
Taxonomic identifieri7998 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiSiluriformesIctaluridaeIctalurus
Proteomesi
  • UP000221080 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Interactioni

GO - Molecular functioni

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini135 – 229Fork-headInterPro annotationAdd BLAST95

Family and domain databases

CDDicd00059 FH, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR013638 Fork-head_N
IPR001766 Fork_head_dom
IPR018533 Forkhead_box_C
IPR018122 TF_fork_head_CS_1
IPR030456 TF_fork_head_CS_2
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00250 Forkhead, 1 hit
PF08430 Forkhead_N, 1 hit
PF09354 HNF_C, 1 hit
PRINTSiPR00053 FORKHEAD
SMARTiView protein in SMART
SM00339 FH, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS00657 FORK_HEAD_1, 1 hit
PS00658 FORK_HEAD_2, 1 hit
PS50039 FORK_HEAD_3, 1 hit

Sequencei

Sequence statusi: Complete.

W5UMQ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSSVKMESH EIPEWSGFYS EASEMYSSAS AMNSVSSLNS YINLNPAGSS
60 70 80 90 100
TSMNMGYGNP GLNAMGGAAN HMNLGTSLNT SSLTQLSPSA SSLAPLSHYQ
110 120 130 140 150
SMNQPISQLS YPSPPALNRA KEVPKPYRRS LTHAKPPYSY ISLITMAIQQ
160 170 180 190 200
SSNKMLTLNE IYQWIMDLFP YYRENQQRWQ NSIRHSLSFN DCFVKVARSP
210 220 230 240 250
DKPGKGSYWA LHPNSGNMFE NGCYLRRQKR FKIEDKPGKK GGGKSQDGVN
260 270 280 290 300
SKHANSEGVQ EERSPATGSS DGADSAQSDV SHPGSASEEQ QMSLAPLEGP
310 320 330 340 350
PQSVIPSAMP PSGSHLHSEG INTSPHLLSN PIQHHHLDLQ NDPLKSMDPQ
360 370 380 390 400
YNFNHPFSIT NLMSNEQKME LKSYQDHVMA YNGYATSSPV AAKQIYDSAG
410 420
PSSIDSGGYY QTLYSRSVLN AS
Length:422
Mass (Da):46,219
Last modified:April 16, 2014 - v1
Checksum:i64E214AFA669A77F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JT415234 mRNA Translation: AHH40957.1
RefSeqiXP_017321211.1, XM_017465722.1
UniGeneiIpu.23119

Genome annotation databases

GeneIDi108264305
KEGGiipu:108264305

Similar proteinsi

Entry informationi

Entry nameiW5UMQ4_ICTPU
AccessioniPrimary (citable) accession number: W5UMQ4
Entry historyiIntegrated into UniProtKB/TrEMBL: April 16, 2014
Last sequence update: April 16, 2014
Last modified: February 28, 2018
This is version 22 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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