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UniProtKB - W5GCP8 (W5GCP8_WHEAT)

Entry version 50 (02 Dec 2020)
Sequence version 1 (19 Mar 2014)
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Protein

Histone H3

Gene
N/A
Organism
Triticum aestivum (Wheat)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Histone H3UniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiTriticum aestivum (Wheat)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri4565 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Pooideae › Triticodae › Triticeae › Triticinae › Triticum
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000019116 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unplaced

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Chromosome, Nucleosome coreUniRule annotation, NucleusUniRule annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		W5GCP8

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		W5GCP8, baseline

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

UniRule annotation

GO - Molecular functioni

Complete GO annotation on QuickGO ...

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		4565.Traes_6AS_8E3BD132E.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1 – 133HistoneInterPro annotationAdd BLAST133

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 21DisorderedSequence analysisAdd BLAST21

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the histone H3 family.UniRule annotationARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1745, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_078295_4_0_1

Identification of Orthologs from Complete Genome Data

More...OMAi		RKCAPTT

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.20.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR009072, Histone-fold
IPR007125, Histone_H2A/H2B/H3
IPR000164, Histone_H3/CENP-A

The PANTHER Classification System

More...PANTHERi		PTHR11426, PTHR11426, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00125, Histone, 1 hit

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR00622, HISTONEH3

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00428, H3, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF47113, SSF47113, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00322, HISTONE_H3_1, 1 hit
PS00959, HISTONE_H3_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

W5GCP8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MARTKQTARK STGGKAPRKQ LATTIAARKS APTTGGVKKP HRYRPGTVAL 
        60         70         80         90        100
REIRKYQKST DLLIRKLPFQ RLVREIAQDF KTDLRFQSHA VLALQEAAEA 
       110        120        130 
YLVGLFEDTN LCAIHAKRVT IMPKDIQLAR RIRGERA
Length:137
Mass (Da):15,478
Last modified:March 19, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i386D6C04E0EB1F2E
GO

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		TraesCS6A02G038400.1; TraesCS6A02G038400.1; TraesCS6A02G038400
TraesCS6A02G038500.1; TraesCS6A02G038500.1; TraesCS6A02G038500
TraesCS6B02G053200.1; TraesCS6B02G053200.1; TraesCS6B02G053200
TraesCS6B02G053300.1; TraesCS6B02G053300.1; TraesCS6B02G053300
TraesCS6D02G044300.1; TraesCS6D02G044300.1; TraesCS6D02G044300

Gramene; a comparative resource for plants

More...Gramenei		TraesCAD_scaffold_001544_01G000200.1; TraesCAD_scaffold_001544_01G000200.1; TraesCAD_scaffold_001544_01G000200
TraesCAD_scaffold_001544_01G000300.1; TraesCAD_scaffold_001544_01G000300.1; TraesCAD_scaffold_001544_01G000300
TraesCAD_scaffold_029377_01G000100.1; TraesCAD_scaffold_029377_01G000100.1; TraesCAD_scaffold_029377_01G000100
TraesCAD_scaffold_165003_01G000100.1; TraesCAD_scaffold_165003_01G000100.1; TraesCAD_scaffold_165003_01G000100
TraesCLE_scaffold_073914_01G000100.1; TraesCLE_scaffold_073914_01G000100.1; TraesCLE_scaffold_073914_01G000100
TraesCLE_scaffold_143525_01G000100.1; TraesCLE_scaffold_143525_01G000100.1; TraesCLE_scaffold_143525_01G000100
TraesCLE_scaffold_143525_01G000200.1; TraesCLE_scaffold_143525_01G000200.1; TraesCLE_scaffold_143525_01G000200
TraesCLE_scaffold_159939_01G000100.1; TraesCLE_scaffold_159939_01G000100.1; TraesCLE_scaffold_159939_01G000100
TraesCS6A02G038400.1; TraesCS6A02G038400.1; TraesCS6A02G038400
TraesCS6A02G038500.1; TraesCS6A02G038500.1; TraesCS6A02G038500
TraesCS6B02G053200.1; TraesCS6B02G053200.1; TraesCS6B02G053200
TraesCS6B02G053300.1; TraesCS6B02G053300.1; TraesCS6B02G053300
TraesCS6D02G044300.1; TraesCS6D02G044300.1; TraesCS6D02G044300
TraesPAR_scaffold_008653_01G000100.1; TraesPAR_scaffold_008653_01G000100.1; TraesPAR_scaffold_008653_01G000100
TraesPAR_scaffold_077721_01G000100.1; TraesPAR_scaffold_077721_01G000100.1; TraesPAR_scaffold_077721_01G000100
TraesPAR_scaffold_077721_01G000200.1; TraesPAR_scaffold_077721_01G000200.1; TraesPAR_scaffold_077721_01G000200
TraesPAR_scaffold_125948_01G000100.1; TraesPAR_scaffold_125948_01G000100.1; TraesPAR_scaffold_125948_01G000100
TraesPAR_scaffold_175144_01G000100.1; TraesPAR_scaffold_175144_01G000100.1; TraesPAR_scaffold_175144_01G000100
TraesROB_scaffold_009592_01G000300.1; TraesROB_scaffold_009592_01G000300.1; TraesROB_scaffold_009592_01G000300
TraesROB_scaffold_102097_01G000100.1; TraesROB_scaffold_102097_01G000100.1; TraesROB_scaffold_102097_01G000100
TraesROB_scaffold_161125_01G000100.1; TraesROB_scaffold_161125_01G000100.1; TraesROB_scaffold_161125_01G000100
TraesWEE_scaffold_036616_01G000100.1; TraesWEE_scaffold_036616_01G000100.1; TraesWEE_scaffold_036616_01G000100
TraesWEE_scaffold_036616_01G000200.1; TraesWEE_scaffold_036616_01G000200.1; TraesWEE_scaffold_036616_01G000200
TraesWEE_scaffold_096264_01G000100.1; TraesWEE_scaffold_096264_01G000100.1; TraesWEE_scaffold_096264_01G000100
TraesWEE_scaffold_185687_01G000200.1; TraesWEE_scaffold_185687_01G000200.1; TraesWEE_scaffold_185687_01G000200

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi4565.Traes_6AS_8E3BD132E.1

Proteomic databases

PRIDEiW5GCP8

Genome annotation databases

EnsemblPlantsiTraesCS6A02G038400.1; TraesCS6A02G038400.1; TraesCS6A02G038400
TraesCS6A02G038500.1; TraesCS6A02G038500.1; TraesCS6A02G038500
TraesCS6B02G053200.1; TraesCS6B02G053200.1; TraesCS6B02G053200
TraesCS6B02G053300.1; TraesCS6B02G053300.1; TraesCS6B02G053300
TraesCS6D02G044300.1; TraesCS6D02G044300.1; TraesCS6D02G044300
GrameneiTraesCAD_scaffold_001544_01G000200.1; TraesCAD_scaffold_001544_01G000200.1; TraesCAD_scaffold_001544_01G000200
TraesCAD_scaffold_001544_01G000300.1; TraesCAD_scaffold_001544_01G000300.1; TraesCAD_scaffold_001544_01G000300
TraesCAD_scaffold_029377_01G000100.1; TraesCAD_scaffold_029377_01G000100.1; TraesCAD_scaffold_029377_01G000100
TraesCAD_scaffold_165003_01G000100.1; TraesCAD_scaffold_165003_01G000100.1; TraesCAD_scaffold_165003_01G000100
TraesCLE_scaffold_073914_01G000100.1; TraesCLE_scaffold_073914_01G000100.1; TraesCLE_scaffold_073914_01G000100
TraesCLE_scaffold_143525_01G000100.1; TraesCLE_scaffold_143525_01G000100.1; TraesCLE_scaffold_143525_01G000100
TraesCLE_scaffold_143525_01G000200.1; TraesCLE_scaffold_143525_01G000200.1; TraesCLE_scaffold_143525_01G000200
TraesCLE_scaffold_159939_01G000100.1; TraesCLE_scaffold_159939_01G000100.1; TraesCLE_scaffold_159939_01G000100
TraesCS6A02G038400.1; TraesCS6A02G038400.1; TraesCS6A02G038400
TraesCS6A02G038500.1; TraesCS6A02G038500.1; TraesCS6A02G038500
TraesCS6B02G053200.1; TraesCS6B02G053200.1; TraesCS6B02G053200
TraesCS6B02G053300.1; TraesCS6B02G053300.1; TraesCS6B02G053300
TraesCS6D02G044300.1; TraesCS6D02G044300.1; TraesCS6D02G044300
TraesPAR_scaffold_008653_01G000100.1; TraesPAR_scaffold_008653_01G000100.1; TraesPAR_scaffold_008653_01G000100
TraesPAR_scaffold_077721_01G000100.1; TraesPAR_scaffold_077721_01G000100.1; TraesPAR_scaffold_077721_01G000100
TraesPAR_scaffold_077721_01G000200.1; TraesPAR_scaffold_077721_01G000200.1; TraesPAR_scaffold_077721_01G000200
TraesPAR_scaffold_125948_01G000100.1; TraesPAR_scaffold_125948_01G000100.1; TraesPAR_scaffold_125948_01G000100
TraesPAR_scaffold_175144_01G000100.1; TraesPAR_scaffold_175144_01G000100.1; TraesPAR_scaffold_175144_01G000100
TraesROB_scaffold_009592_01G000300.1; TraesROB_scaffold_009592_01G000300.1; TraesROB_scaffold_009592_01G000300
TraesROB_scaffold_102097_01G000100.1; TraesROB_scaffold_102097_01G000100.1; TraesROB_scaffold_102097_01G000100
TraesROB_scaffold_161125_01G000100.1; TraesROB_scaffold_161125_01G000100.1; TraesROB_scaffold_161125_01G000100
TraesWEE_scaffold_036616_01G000100.1; TraesWEE_scaffold_036616_01G000100.1; TraesWEE_scaffold_036616_01G000100
TraesWEE_scaffold_036616_01G000200.1; TraesWEE_scaffold_036616_01G000200.1; TraesWEE_scaffold_036616_01G000200
TraesWEE_scaffold_096264_01G000100.1; TraesWEE_scaffold_096264_01G000100.1; TraesWEE_scaffold_096264_01G000100
TraesWEE_scaffold_185687_01G000200.1; TraesWEE_scaffold_185687_01G000200.1; TraesWEE_scaffold_185687_01G000200

Phylogenomic databases

eggNOGiKOG1745, Eukaryota
HOGENOMiCLU_078295_4_0_1
OMAiRKCAPTT

Gene expression databases

ExpressionAtlasiW5GCP8, baseline

Family and domain databases

Gene3Di1.10.20.10, 1 hit
InterProiView protein in InterPro
IPR009072, Histone-fold
IPR007125, Histone_H2A/H2B/H3
IPR000164, Histone_H3/CENP-A
PANTHERiPTHR11426, PTHR11426, 1 hit
PfamiView protein in Pfam
PF00125, Histone, 1 hit
PRINTSiPR00622, HISTONEH3
SMARTiView protein in SMART
SM00428, H3, 1 hit
SUPFAMiSSF47113, SSF47113, 1 hit
PROSITEiView protein in PROSITE
PS00322, HISTONE_H3_1, 1 hit
PS00959, HISTONE_H3_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiW5GCP8_WHEAT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: W5GCP8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 19, 2014
Last sequence update: March 19, 2014
Last modified: December 2, 2020
This is version 50 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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