Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

UniProtKB - V7FHU5 (V7FHU5_9RHIZ)

Entry version 18 (17 Jun 2020)
Sequence version 1 (19 Feb 2014)
Previous versions | rss
Add a publicationFeedback
Protein

LPD22 domain-containing protein

Gene

X759_21720

Organism
Mesorhizobium sp. LSHC420B00
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
LPD22 domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:X759_21720Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMesorhizobium sp. LSHC420B00Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1287292 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Phyllobacteriaceae › Mesorhizobium ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000018524 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini20 – 121LPD22InterPro annotationAdd BLAST102

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni831 – 856DisorderedSequence analysisAdd BLAST26

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili557 – 577Sequence analysisAdd BLAST21
Coiled coili1507 – 1527Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR040738, LPD22

Pfam protein domain database

More...Pfami		View protein in Pfam
PF18834, LPD22, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

V7FHU5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDTIADYNAW KDKQQQNGVG AAQVVLGSVN EKPDEIAGDL NLANEFGKAT 
        60         70         80         90        100
GNPVPPLPMV REYRNVFQQK IEEQKNKTIL SSKPRLTEWL RSPDNAALAR 
       110        120        130        140        150
DDLQNLSWFE GFGRGVTNTL SRSGDRLSQM GNQFMFEQTA GRDRDRSKLF 
       160        170        180        190        200
GQILQEEKTS SGLKDMQGNP LETWTGAEYL GAFGRWVDAR YADMIGADDN 
       210        220        230        240        250
AAAVQFAEGV KASQDRLAAT PKSATAQSFE KAAIVKDATA GQAIANFGTA 
       260        270        280        290        300
FLQNPIGGLS WAMETAGESA PQLAAALVAS RFNPALGVGV LGGGSYATER 
       310        320        330        340        350
YTAPADFLAE KGIDLGKPED VQRVLSDPKL LEEAAKRGVI RGAIVGAFDL 
       360        370        380        390        400
LSGGLAGKAA SHNPIVEAIA QSAQQAILGS AGEYSARVAS GQPIDWNDIV 
       410        420        430        440        450
AEGVAEIATA PVDMGVAGRE FAANRRKAKT AEGTVAQLGE ISANAQASAV 
       460        470        480        490        500
RARTPDKFRQ FVEAATANGP VENVYVPAEQ FSTYFQSLGV DPYALVDELD 
       510        520        530        540        550
GVSRDDLDIA LAGGGDLQIP TATYAAKIAG TEHDAFLMEN MRFDPNEFTA 
       560        570        580        590        600
LEAKEFNERA QDAMDEAFQA AETARLEDEG SRSFEQQIYD TMVSRLREAG 
       610        620        630        640        650
RSTDVATTEA TLYPAFYRTM AERSGQTVED FMAAYPLPQV SGSIPEGMQF 
       660        670        680        690        700
RDVDALNRTL AEARARRSAG FDKRQSLLEF ISDYGGINDV GGNLKARDAA 
       710        720        730        740        750
VIKRKGKKSL KLARGGIVDG VRDMFGQTSG KKHGIDDVAQ AAIEAGYLVN 
       760        770        780        790        800
DPVATDYRNA VKEGREVPNI GNALLDAIDR ELRGEADYAV PADAAAADHS 
       810        820        830        840        850
AQLDQIEAYL SSLGVGLDDD DAAIRAAVQA DQADEGKKYG QSGDVRGPRG 
       860        870        880        890        900
SIQFPGGGVG NGDTVVRLFE GADLSTFLHE SGHYFLTVLR DLAAKGEASS 
       910        920        930        940        950
SGDMESVKAW WGENADAVAK DGMRVMPDVT LTADDVNAAL ANGTTGDLMK 
       960        970        980        990       1000
DAAVDVGMQE QWARGFEAYL MEGKAPSIEL RGAFEKFRSW LISVYRRLAG 
      1010       1020       1030       1040       1050
LNVTVSDGIR EVFDRMVASD DEIAKAKEQA GDRGPIFATA DEMGLTPGEF 
      1060       1070       1080       1090       1100
ASFLKLRDQA EDDAKARLLR EAMAPVKRAQ EKWFKEERAK VREEVERQVN 
      1110       1120       1130       1140       1150
TYRYYRAWEW MGNRRWWDAE TEPEGMPDIR LSKEILVQRY GEGVLKTLPR 
      1160       1170       1180       1190       1200
GMQTIYAVEG GVDPDDAAGW FGFDSGDELV QALEKAPPRK EAIEAETDKL 
      1210       1220       1230       1240       1250
MRERHGDVLT DGSVEAAALD ALHSDKRGQW IAAELKAVVE VAGAGLGMTA 
      1260       1270       1280       1290       1300
KEARASARAS IARMRVRDAV NSSRFLAAER KAADDAAKLG AMLSREKVWL 
      1310       1320       1330       1340       1350
DASRRRIETK ARSASKGSTS PDTVATAIDA YNAKFETTQS TFTVPDREAV 
      1360       1370       1380       1390       1400
SKSGNAFTIK GGERTATSLG YNDLVAKLVE TKRRQLVNHA LYMEARNVAG 
      1410       1420       1430       1440       1450
EVEKAENFVA KLGKKSTRER IAGAGRRENA QVDYLGAIDE ILERYDFRKL 
      1460       1470       1480       1490       1500
SGAAEGRRGA LNAFVAAMTA AGRENELAIP EAVLSDAARR PYKTLPVEEM 
      1510       1520       1530       1540       1550
RGVVDSLKNL EHMATRWNKL IDAQKQRELE AVVTDVVAAF DANMPKRPPG 
      1560       1570       1580       1590       1600
RVGTKGEALR HSVRQFFDLV LNAGTILREI DGFKDLGAAY RNIKTPIDEA 
      1610       1620       1630       1640       1650
MDRLTVRKLK AAGDLESLYA VYDKADRRRM AVRDHIPELG YALSKWERIA 
      1660       1670       1680       1690       1700
VALNLGNAGN RARLTDPKVR GSLTEAQIAA VIATLDAKDA AFVQSVWDYV 
      1710       1720       1730       1740       1750
GSFRDDIAAR ERRATGVEPE WVEATPVEIA GKTLKGGYYP LKYDPRLSSL 
      1760       1770       1780       1790       1800
ARDDEANNIA QALQAGRFGK AQTRQGHLKE RVRSSGRDVE LDMSVLHRHV 
      1810       1820       1830       1840       1850
NQVIYDLELS EPVANSWRIL QNGEIRSAFM EAGKQADFDA LEIWLKDVAE 
      1860       1870       1880       1890       1900
GELKSADLVG RAARTLKSNF TAAKLAFNIS TVAMQVTGLS QSMVVVGKKD 
      1910       1920       1930       1940       1950
MAVGIMQAAK NPVSMARDIA AKSPFMASRQ TTFNKDIFDF YSDPKTGPVA 
      1960       1970       1980       1990       2000
SRWGEIKAEI VGPMSFWLMT KVQWYLADVP TWLAGYRQGL RQYGNDEAKA 
      2010       2020       2030       2040       2050
VAHADAVVKR AQASGLFADR SAVERGSVSR TARQNDVVRL FTALGSYMFA 
      2060       2070       2080       2090       2100
KFNVAYERTA KAKRLIGQDG FSARSAQEAL SWTLDMAFLF TLEAVVGAAI 
      2110       2120       2130       2140       2150
RGRLPDDEDD KDDEWAAFLA KQTAFSVMGT LPFIRDSVSA MQGFEAGGAY 
      2160       2170       2180       2190       2200
GSFVKDVVRG GKGVADILTA PFLEDGKVNA SDLKAVINAT CLATGLPAVQ 
      2210       2220 
INRFVDAAWR QAEGKDVSPL EYLLGRIGG
Length:2,229
Mass (Da):242,135
Last modified:February 19, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9B2E7909741161D4
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AYVY01000017 Genomic DNA Translation: ESX70658.1

NCBI Reference Sequences

More...RefSeqi		WP_023720463.1, NZ_AYVY01000017.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		ESX70658; ESX70658; X759_21720

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|381.35.peg.4422

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AYVY01000017 Genomic DNA Translation: ESX70658.1
RefSeqiWP_023720463.1, NZ_AYVY01000017.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiESX70658; ESX70658; X759_21720
PATRICifig|381.35.peg.4422

Family and domain databases

InterProiView protein in InterPro
IPR040738, LPD22
PfamiView protein in Pfam
PF18834, LPD22, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiV7FHU5_9RHIZ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: V7FHU5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 19, 2014
Last sequence update: February 19, 2014
Last modified: June 17, 2020
This is version 18 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again