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Entry version 32 (11 Dec 2019)
Sequence version 1 (19 Feb 2014)
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Protein

SANT domain-containing protein

Gene

PHAVU_002G039700g

Organism
Phaseolus vulgaris (Kidney bean) (French bean)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
SANT domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:PHAVU_002G039700gImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPhaseolus vulgaris (Kidney bean) (French bean)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3885 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideae50 kb inversion cladeNPAAA cladeindigoferoid/millettioid cladePhaseoleaePhaseolus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000226 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3885.XP_007157057.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini770 – 818SANTInterPro annotationAdd BLAST49

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni18 – 53DisorderedSequence analysisAdd BLAST36
Regioni526 – 680DisorderedSequence analysisAdd BLAST155
Regioni701 – 750DisorderedSequence analysisAdd BLAST50
Regioni876 – 910DisorderedSequence analysisAdd BLAST35

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi526 – 568PolyampholyteSequence analysisAdd BLAST43
Compositional biasi638 – 656PolyampholyteSequence analysisAdd BLAST19
Compositional biasi734 – 750PolyampholyteSequence analysisAdd BLAST17
Compositional biasi876 – 904PolyampholyteSequence analysisAdd BLAST29

Phylogenomic databases

KEGG Orthology (KO)

More...
KOi
K15198

Identification of Orthologs from Complete Genome Data

More...
OMAi
KDHSHFE

Database of Orthologous Groups

More...
OrthoDBi
765837at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00167 SANT, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR009057 Homeobox-like_sf
IPR001005 SANT/Myb
IPR039467 TFIIIB_B''_Myb

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF15963 Myb_DNA-bind_7, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00717 SANT, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46689 SSF46689, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

V7CJG9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDPFDDLLPV ASVERIRPGA KFVPKAKPKQ RRKEVPSSEK ATSSRDGLTG
60 70 80 90 100
NECQNVVAST LSVPAEESMG SIHHTQLEFP NSEREVPKQI SVEGDGAASV
110 120 130 140 150
HDSTFTDADQ NSTYFLESAC EADPTEFDGD SVTNFFSETN LNNGITQPVH
160 170 180 190 200
PANAVETKLN NVTAPFTTCS NIDRMKEPPK NGEGSFLDSN KCLELIDNSL
210 220 230 240 250
QVGTELGFKS ASDNKVAIVQ TVDSNSNFGK EPELVSAEIE LDPFSDILPD
260 270 280 290 300
LPTRNVHKFK PKIKPRPRVG NMPASASANV MMEKSVELPT FSTTDFQSFQ
310 320 330 340 350
SSGILNQTTS LPLPTSEILT TNYLPSNFGD TSSNVPISED SKSLAAATPS
360 370 380 390 400
QLDSLNAMLL GDAVHNGTRD WPSAFGKSSG EATDIFCGLE SLDDFLAQAT
410 420 430 440 450
TDTGKPALHS FNEKGAEENF VAPACSSINS FGECDTTQVQ RCPEYHTPQD
460 470 480 490 500
PVTFNEATIL NENDTHTNNR MSETEEIVDL NPTYTRDDVF DYQSMKSGED
510 520 530 540 550
PTSGILVHED LTNAADSSTL ADFLHANDSR EKEDANQRKK DGTDSCSLRK
560 570 580 590 600
NKRSSIAGEE DNGGKTLRQR RKLAASKPAN SSLNEDVEDD NDLDPPYHSN
610 620 630 640 650
EHELEENDDD CEVDHSSKKK RGSKSSQKKS VPKSGKTSQK RKKADDDVQK
660 670 680 690 700
TKEPPKKFSH STRRKKRCVD KALLEIPEDE LDPRTLPIKD IILLAEHRER
710 720 730 740 750
QAKKEAMASN TTPSNQSAGD FLHEAGAYNE QEFSGSEDGR DPYDDDQDNE
760 770 780 790 800
RIESTSILYN YQTLMEKRPR RGKWSKQDTE VFYEAIRELG TDFSMIQQLF
810 820 830 840 850
PDKTRRQIKL KYKKEEREHY LRLRDAIHNR SKDHSHYKLL IERLQQASTK
860 870 880 890 900
EEEVVDLTEG TNEEVVEVAT TIKHDADVKA QEDSVAAESP EKSDDSEDES
910
LKWTEYKSLY
Length:910
Mass (Da):101,288
Last modified:February 19, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i34C7A409176B76E7
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CM002289 Genomic DNA Translation: ESW29051.1

NCBI Reference Sequences

More...
RefSeqi
XP_007157057.1, XM_007156995.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
ESW29051; ESW29051; PHAVU_002G039700g

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
18636882

Gramene; a comparative resource for plants

More...
Gramenei
ESW29051; ESW29051; PHAVU_002G039700g

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pvu:PHAVU_002G039700g

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM002289 Genomic DNA Translation: ESW29051.1
RefSeqiXP_007157057.1, XM_007156995.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3885.XP_007157057.1

Genome annotation databases

EnsemblPlantsiESW29051; ESW29051; PHAVU_002G039700g
GeneIDi18636882
GrameneiESW29051; ESW29051; PHAVU_002G039700g
KEGGipvu:PHAVU_002G039700g

Phylogenomic databases

KOiK15198
OMAiKDHSHFE
OrthoDBi765837at2759

Family and domain databases

CDDicd00167 SANT, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001005 SANT/Myb
IPR039467 TFIIIB_B''_Myb
PfamiView protein in Pfam
PF15963 Myb_DNA-bind_7, 1 hit
SMARTiView protein in SMART
SM00717 SANT, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiV7CJG9_PHAVU
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: V7CJG9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 19, 2014
Last sequence update: February 19, 2014
Last modified: December 11, 2019
This is version 32 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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