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UniProtKB - U4KNM5 (U4KNM5_ACHPJ)

Entry version 22 (19 Jan 2022)
Sequence version 1 (11 Dec 2013)
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Protein

MACPF domain-containing protein

Gene

BN85402230

Organism
Acholeplasma palmae (strain ATCC 49389 / J233)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Protein family/group databases

Transport Classification Database

More...TCDBi		1.C.39.4.6, the membrane attack complex/perforin (macpf) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
MACPF domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:BN85402230Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiAcholeplasma palmae (strain ATCC 49389 / J233)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1318466 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Tenericutes › Mollicutes › Acholeplasmatales › Acholeplasmataceae › Acholeplasma ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000032740 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome Acholeplasma palmae

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		1318466.BN85402230

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini35 – 361MACPFInterPro annotationAdd BLAST327

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_285398_0_0_14

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.60.40.4270, 7 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR013378, Listeria/Bacterioides_rpt
IPR042229, Listeria/Bacterioides_rpt_sf
IPR020864, MACPF

Pfam protein domain database

More...Pfami		View protein in Pfam
PF09479, Flg_new, 8 hits
PF01823, MACPF, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR02543, List_Bact_rpt, 4 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51412, MACPF_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

U4KNM5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFSDINITEG ENMKKILSLF LILGTLVTLV SCGIAATSRN VPEKLVVSSN 
        60         70         80         90        100
SDGNRVENGL FMSHEKSETD SSFLGYGINL VNHNQVNARN INITYPIFDL 
       110        120        130        140        150
DKLSTQPLMK VYENSSEINN IEGSSMSEYI QNLETKFNLN AELKMFGKVD 
       160        170        180        190        200
LKAGFTGSYS DKSNFMFKTV NINEQSYYFA LQTNPNDYVS LLSERFINDA 
       210        220        230        240        250
MELPIETLVK RYGTHILTSV TMGGGINLDY TISSNSQSSA ASLSTAIDMS 
       260        270        280        290        300
VRTWFSKASG SSSMDYREEA KKSDTNVSVN MKVIGGEAVG IFAEQDIIQK 
       310        320        330        340        350
YPEWQKTIAT SPALMGIKDS NSLFPIWEIV GMINDSSSAA QRRSAEIQKY 
       360        370        380        390        400
FLKIGQENYS DLISQYSKEK IIFPSYIEEV SVVPEGSTET GSIQNITYKT 
       410        420        430        440        450
GVIASQDKYK INLKFDSFTN TLPTINYIVT EGQEYVKINS NGVIVPDSKK 
       460        470        480        490        500
INELNQPGVN VSVEINAGTT SKTIKLYIQK IHRIDFISNG GSDVKSINNI 
       510        520        530        540        550
ETGRIVYLAE EPKRLNYRFI GWYLDEELKN EYIFGTEVTS DLILYAKWER 
       560        570        580        590        600
LLRVEFYDGV LLDKLMVTVR NGQSIAEVST PIVKEGYRFI GWYIGKDLNE 
       610        620        630        640        650
KYNFGDSVTR DLILYAKWER LLTVNFVSNG QSHAVINKIV SGTVIDKAIN 
       660        670        680        690        700
PQRYGYRFVG WYEDLSSTIE YNFETPITKD VTLYAKWEEK PKLTLTFEYR 
       710        720        730        740        750
DNIRDNYILN NVLPESTVDL SSTPELSSVT RTGYRFLGWF YMYEDQERSL 
       760        770        780        790        800
HGDRVYSNIT VYAKWEKGNI TVIYQGVNGN EHSNPIDISG NAIVGLKDAN 
       810        820        830        840        850
RVGYDFLGWY NESDERITQI EGKNIIESTV VTAKWAKSKY SIEYQLNGGT 
       860        870        880        890        900
KGNNPSIFEY QEVLPLNEAT KDGHNFAGWY KDSGLTVRIE NTAGLTTSIT 
       910        920        930        940        950
VYAKWTVKQY NINYEINGGT NHSSNLSQYT YGQIQNFNAP SKFGYNFAGW 
       960        970        980        990       1000
YKDSSFTQSV TSTEGGNDHI TVYAKWNPEV YQITYILNGG TNSSSNKSTY 
      1010       1020       1030       1040       1050
YYEQNEYFSY PSKSGYDFKG WYTDSNFSNR ISSTTGIMGN ITIYAKWEKT 
      1060       1070       1080 
VVKDPDPVKY EYIYNSNGQI IGVYYPDSGI TIWYE
Length:1,085
Mass (Da):122,873
Last modified:December 11, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7CD83BDDB90F96AE
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
FO681347 Genomic DNA Translation: CCV63800.1

Genome annotation databases

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		apal:BN85402230

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO681347 Genomic DNA Translation: CCV63800.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi1318466.BN85402230

Protein family/group databases

TCDBi1.C.39.4.6, the membrane attack complex/perforin (macpf) family

Genome annotation databases

KEGGiapal:BN85402230

Phylogenomic databases

HOGENOMiCLU_285398_0_0_14

Family and domain databases

Gene3Di2.60.40.4270, 7 hits
InterProiView protein in InterPro
IPR013378, Listeria/Bacterioides_rpt
IPR042229, Listeria/Bacterioides_rpt_sf
IPR020864, MACPF
PfamiView protein in Pfam
PF09479, Flg_new, 8 hits
PF01823, MACPF, 1 hit
TIGRFAMsiTIGR02543, List_Bact_rpt, 4 hits
PROSITEiView protein in PROSITE
PS51412, MACPF_2, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiU4KNM5_ACHPJ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: U4KNM5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 11, 2013
Last sequence update: December 11, 2013
Last modified: January 19, 2022
This is version 22 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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