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Protein
Submitted name:

RAD54 like 2

Gene

RAD54L2

Organism
Ficedula albicollis (Collared flycatcher) (Muscicapa albicollis)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
RAD54 like 2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RAD54L2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiFicedula albicollis (Collared flycatcher) (Muscicapa albicollis)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri59894 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaePasseriformesMuscicapidaeFicedula
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000016665 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unplaced

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini302 – 522Helicase ATP-bindingInterPro annotationAdd BLAST221
Domaini738 – 905Helicase C-terminalInterPro annotationAdd BLAST168

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili17 – 39Sequence analysisAdd BLAST23
Coiled coili965 – 985Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

Ensembl GeneTree

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GeneTreei
ENSGT00940000155763

Identification of Orthologs from Complete Genome Data

More...
OMAi
PINEWSS

Database of Orthologous Groups

More...
OrthoDBi
815681at2759

Family and domain databases

Conserved Domains Database

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CDDi
cd00079 HELICc, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.50.10810, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR038718 SNF2-like_sf
IPR000330 SNF2_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00271 Helicase_C, 1 hit
PF00176 SNF2_N, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

U3K2S1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSDESISGSD PDLDPDLEQE DMEEEEEEDE EEAMEEDNDG DDEEDLLDES
60 70 80 90 100
DQPRDAMFSG DQAEHAEDGE WQRSTSTTSS QSERAEQLLQ NQHKSLASED
110 120 130 140 150
TKKKRAQKPS HMRRNIRKLL REDQLEAVTK AAQQEELERR KRLEQQRKDY
160 170 180 190 200
PASIPTVPLE FLPEDIVFRT AEATQLPPQV LAEEVICLDS TSSGSEDDTK
210 220 230 240 250
GKNSIKDEVI ELSSGEDDAL QIVDSSDSGN EGEEDGGEES SGSHVNDALN
260 270 280 290 300
QSDALGQVVV NINHPPNEED IFLAPQLAHA VKPHQIGGIR FLYDNLVESL
310 320 330 340 350
ERFKTSSGFG CILAHSMGLG KTIQVISFLD VLFRHTEAKT VLAIVPVNTL
360 370 380 390 400
QNWLAEFNMW LPAPENLPAD YNSKEVQPRT FKVHILNDEH KTTAARAKVV
410 420 430 440 450
NDWVTEGGVL LMGYEMYRLL SLKKSFATGR KKRTKKQTGP VIIDLDEEDR
460 470 480 490 500
QQELLKGIEK ALSRPGPDVV ICDEGHRIKN CHASTSQALK NIRSRRRVVL
510 520 530 540 550
TGYPLQNNLI EYWCMVDFVR PDFLGSRQEF SNMFERPILN GQCIDSTPQD
560 570 580 590 600
VRLMRYRSHV LHSLLEGFVQ RRGHNVLKVQ LPSKEEHVIL VRLSKIQRAL
610 620 630 640 650
YTEFMNRFRD AGNSGWLGLN PLKAFCVCCK IWNHPDVLYE ALQKENLANE
660 670 680 690 700
QDLDVDDLGT ANTNSRCQPQ GIKVKTESNA LASPVGEATN SKFLQSVGFN
710 720 730 740 750
PFQERANQVV TYEWAKDILC DYQTGVLENS PKMVLLFHLI EESVKLGDKI
760 770 780 790 800
LVFSQSLSTL SVIEEFLAKR PMPSPPGSDG GVHNWVRNIN YYRLDGSTSA
810 820 830 840 850
SERERLINQF NDPSNTSVWL FLLSTRAGCL GVNLIGANRV VVFDASWNPC
860 870 880 890 900
HDAQAVCRVY RYGQKKPCHI YRLVSDYTLE KKIYDRQISK QGMSDRVVDD
910 920 930 940 950
LNPVLNFTRR EVENLLHFVE EESDPAQLSL NPSKMKESVL QLACLKYPHL
960 970 980 990 1000
ITKEPFQHES LLIDRKEHKL TKAEKKAAKK SYEEEKRASV PYTRPSYAQY
1010 1020 1030 1040 1050
YPASDQSLTS IPAFSQRNWR PALKGEDKPV ASVRPVQSTP IPMMPRHVPM
1060 1070 1080 1090 1100
GGAGSASSSN PAVNFPINYL QRAGVFVQKI VTTTDIVIPG TNTSTDVQAR
1110 1120 1130 1140 1150
ISAGESIHII RGTKGTYIRT SDGRIFAIRT TGKPKGNEDR RTAASGSQSS
1160 1170 1180 1190 1200
SLESTSNGRH SASSPQLPSA EELTRPISPD SPEIISELQQ YAEAAAARES
1210 1220 1230 1240 1250
RHGSPSTTAA QPHGARTDPA PGAARGAEQR LGAPCTAPSV SSALPATSQH
1260 1270 1280 1290 1300
GDAHPVLDLR GNKRKSTSPS AAEEQSRRQQ KKRQLPSSVQ PYEHGYPVSG
1310 1320
VENRGVLSKL LDNLSLDAPW K
Length:1,321
Mass (Da):147,418
Last modified:November 13, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iFF30CBA3810F7041
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AGTO01001625 Genomic DNA No translation available.

NCBI Reference Sequences

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RefSeqi
XP_005052927.1, XM_005052870.2

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSFALT00000009364; ENSFALP00000009325; ENSFALG00000008938

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
101807517

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTO01001625 Genomic DNA No translation available.
RefSeqiXP_005052927.1, XM_005052870.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSFALT00000009364; ENSFALP00000009325; ENSFALG00000008938
GeneIDi101807517

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
23132

Phylogenomic databases

GeneTreeiENSGT00940000155763
OMAiPINEWSS
OrthoDBi815681at2759

Family and domain databases

CDDicd00079 HELICc, 1 hit
Gene3Di3.40.50.10810, 1 hit
InterProiView protein in InterPro
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR038718 SNF2-like_sf
IPR000330 SNF2_N
PfamiView protein in Pfam
PF00271 Helicase_C, 1 hit
PF00176 SNF2_N, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiU3K2S1_FICAL
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: U3K2S1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 13, 2013
Last sequence update: November 13, 2013
Last modified: January 16, 2019
This is version 40 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health

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