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Protein
Submitted name:

Cleavage and polyadenylation specific factor 4

Gene

CPSF4

Organism
Callithrix jacchus (White-tufted-ear marmoset)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri35 – 59C3H1-typePROSITE-ProRule annotationAdd BLAST25
Zinc fingeri62 – 89C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri90 – 117C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri118 – 142C3H1-typePROSITE-ProRule annotationAdd BLAST25
Zinc fingeri143 – 169C3H1-typePROSITE-ProRule annotationAdd BLAST27

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Cleavage and polyadenylation specific factor 4Imported
Submitted name:
Cleavage and polyadenylation specificity factor subunit 4 isoform 1Imported
Gene namesi
Name:CPSF4Imported
OrganismiCallithrix jacchus (White-tufted-ear marmoset)Imported
Taxonomic identifieri9483 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniPlatyrrhiniCebidaeCallitrichinaeCallithrixCallithrix
Proteomesi
  • UP000008225 Componenti: Unplaced

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi9483.ENSCJAP00000029160

Structurei

3D structure databases

SMRiU3BK11
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini35 – 59C3H1-typeInterPro annotationAdd BLAST25
Domaini62 – 89C3H1-typeInterPro annotationAdd BLAST28
Domaini90 – 117C3H1-typeInterPro annotationAdd BLAST28
Domaini118 – 142C3H1-typeInterPro annotationAdd BLAST25
Domaini143 – 169C3H1-typeInterPro annotationAdd BLAST27
Domaini245 – 260CCHC-typeInterPro annotationAdd BLAST16

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri35 – 59C3H1-typePROSITE-ProRule annotationAdd BLAST25
Zinc fingeri62 – 89C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri90 – 117C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri118 – 142C3H1-typePROSITE-ProRule annotationAdd BLAST25
Zinc fingeri143 – 169C3H1-typePROSITE-ProRule annotationAdd BLAST27

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1040 Eukaryota
COG5084 LUCA
GeneTreeiENSGT00390000009627
OMAiRAVCRKN
OrthoDBiEOG091G0JUF
TreeFamiTF314871

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 1 hit
PF00098 zf-CCHC, 1 hit
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 1 hit
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF57756 SSF57756, 1 hit
SSF90229 SSF90229, 2 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits
PS50158 ZF_CCHC, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.iShow all

U3BK11-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQEIIASVDH IKFDLEIAVE QQLGAQPLPF PGMDKSGAAV CEFFLKAACG
60 70 80 90 100
KGGMCPFRHI SGEKTVVCKH WLRGLCKKGD QCEFLHEYDM TKMPECYFYS
110 120 130 140 150
KFGECSNKEC PFLHIDPESK IKDCPWYDRG FCKHGPLCRH RHTRRVICVN
160 170 180 190 200
YLVGFCPEGP SCKFMHPRFE LPMGTTEQPP LPQQTQPPAK QSNNPPLQRS
210 220 230 240 250
SSLIQLTSQN SSPNQQRTPQ VIGVMQSQNS SAGNRGPRPL EQVTCYKCGE
260
KGHYANRCTK GHLAFLSGQ
Length:269
Mass (Da):30,255
Last modified:November 13, 2013 - v1
Checksum:i49444E3EB840464A
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2R8MYZ1A0A2R8MYZ1_CALJA
Cleavage and polyadenylation specif...
265Annotation score:
A0A2R8P4T8A0A2R8P4T8_CALJA
Cleavage and polyadenylation specif...
211Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GAMT01005767 mRNA Translation: JAB06094.1
GAMS01010453 mRNA Translation: JAB12683.1
GAMR01002641 mRNA Translation: JAB31291.1
GAMQ01006622 mRNA Translation: JAB35229.1
GAMP01010238 mRNA Translation: JAB42517.1

Genome annotation databases

EnsembliENSCJAT00000030813; ENSCJAP00000029160; ENSCJAG00000015826

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GAMT01005767 mRNA Translation: JAB06094.1
GAMS01010453 mRNA Translation: JAB12683.1
GAMR01002641 mRNA Translation: JAB31291.1
GAMQ01006622 mRNA Translation: JAB35229.1
GAMP01010238 mRNA Translation: JAB42517.1

3D structure databases

SMRiU3BK11
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9483.ENSCJAP00000029160

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSCJAT00000030813; ENSCJAP00000029160; ENSCJAG00000015826

Phylogenomic databases

eggNOGiKOG1040 Eukaryota
COG5084 LUCA
GeneTreeiENSGT00390000009627
OMAiRAVCRKN
OrthoDBiEOG091G0JUF
TreeFamiTF314871

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 1 hit
PF00098 zf-CCHC, 1 hit
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 1 hit
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF57756 SSF57756, 1 hit
SSF90229 SSF90229, 2 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits
PS50158 ZF_CCHC, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiU3BK11_CALJA
AccessioniPrimary (citable) accession number: U3BK11
Secondary accession number(s): F7I7Y0
Entry historyiIntegrated into UniProtKB/TrEMBL: November 13, 2013
Last sequence update: November 13, 2013
Last modified: July 18, 2018
This is version 38 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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