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Entry version 28 (29 Sep 2021)
Sequence version 1 (13 Nov 2013)
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Protein
Submitted name:

Putative ATP-dependent RNA helicase TDRD9-like

Gene

tdrd9-like

Organism
Hydra vulgaris (Hydra) (Hydra attenuata)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental proteinARBA annotation, HelicaseImported, Hydrolase
Biological processDifferentiation, MeiosisARBA annotation, RNA-mediated gene silencingARBA annotation, SpermatogenesisARBA annotation
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative ATP-dependent RNA helicase TDRD9-likeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:tdrd9-likeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHydra vulgaris (Hydra) (Hydra attenuata)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri6087 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaCnidariaHydrozoaHydroidolinaAnthoathecataAplanulataHydridaeHydra

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini137 – 261Helicase ATP-bindingInterPro annotationAdd BLAST125
Domaini363 – 531Helicase C-terminalInterPro annotationAdd BLAST169
Domaini942 – 998TudorInterPro annotationAdd BLAST57

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the DEAD box helicase family. DEAH subfamily.ARBA annotation

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...
OMAi
DPCRTVY

Family and domain databases

Conserved Domains Database

More...
CDDi
cd04508, TUDOR, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.40.50.90, 1 hit
3.40.50.300, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011545, DEAD/DEAH_box_helicase_dom
IPR007502, Helicase-assoc_dom
IPR014001, Helicase_ATP-bd
IPR001650, Helicase_C
IPR027417, P-loop_NTPase
IPR035437, SNase_OB-fold_sf
IPR002999, Tudor

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00270, DEAD, 1 hit
PF04408, HA2, 1 hit
PF00271, Helicase_C, 1 hit
PF00567, TUDOR, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487, DEXDc, 1 hit
SM00847, HA2, 1 hit
SM00490, HELICc, 1 hit
SM00333, TUDOR, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540, SSF52540, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51192, HELICASE_ATP_BIND_1, 1 hit
PS51194, HELICASE_CTER, 1 hit
PS50304, TUDOR, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

T2HQX6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMRTGLGIDI TPDVMNDFFQ IKPNKTLGNG HQIAKHHVGT CSFIQSNSGY
60 70 80 90 100
ATPYKKDWND SLEQHLKLSS LSLDTEDLTD NLVSKPEKEN ELLLPEPEER
110 120 130 140 150
TNPIEGKAIS IEVYDNYQFK HEYDPLLPIT SKHDEIIQTI EANRVTVIQG
160 170 180 190 200
STGSGKTTQV PQYILDYHQQ RSKYCNILVT QPRKIAAVSI AKRVSQERGW
210 220 230 240 250
PIGTLVGFQV SRKREVTEDT RITYMTTGVL LQKLIKNKNL NDYTHIILDE
260 270 280 290 300
IHERDQDIDF SMLVVRKYLR TVSRHVKGCS YVSNCRFYFI CKLFFCVDKW
310 320 330 340 350
ETRTSPVLNV EGKMYEVSEY YFNDIATLAA PPQQSLYEPE ISEKCYQFCR
360 370 380 390 400
ELIMALDVDE IGDNYKVGMF SETRGTVLVF LPGLPEIKQM HLHLADIEAR
410 420 430 440 450
SRLKIIPLHS QITSNEQIKV FLPSEKKERK VILSTNIAES SITVPDIKYV
460 470 480 490 500
IDFCLTKQNE TDMETNYQRL TLQWASQASL TQRKGRAGRV SEGYCFRLIS
510 520 530 540 550
KSMFYELPEY CTPEILRSPL QQLVLKVKLL DLGSPAHTLM LSIQPPSLTD
560 570 580 590 600
IQKTILLLKE VGAITVRQNG KINPLDGDLT FVGRVLGSLP VDVRIGKLLL
610 620 630 640 650
IGYTFGVLEE CLTIAGCLSL KSIFSRPFQR DLKAYSNKMH WARYSGSDLL
660 670 680 690 700
ASLHAFMSWK FKKIHTGFGM TETKWAHENF LEFKRFVEVD ELVMELHSRL
710 720 730 740 750
AQFNIHANKN IFESEVLPKD DEFILKLVIA GAFYPNYFQT QPLDEQEAIK
760 770 780 790 800
TMSGLNPFTT VVISGAPPTL CHYKQSVAKL FRQCGRGKKL YFENSRAFVE
810 820 830 840 850
FENFSTGEDF NPVAPAVYMA IKMRHLRIPL DIYVSKQRDE ELRKTLASNP
860 870 880 890 900
LQPFNPETGL RTNRINTYLN KDSKISVTLQ GNVKQVMLKE NGYFHLQIQE
910 920 930 940 950
VLNVDHFWAT YADKETIRIM HHLHNKINEF GGRNWKPMEP ENIQVGAYCL
960 970 980 990 1000
APYEDEFFRA EIIACSPNLI KVFFLDYGNS TQLVEKSYIR KCPDSLLEIP
1010 1020 1030 1040 1050
FQAFECYLSE VKPSRTKWTD QALNRFVELA PIGSAVLIAK VYSVVHGAYH
1060 1070 1080 1090 1100
LELFNGDTSI NQTLIKENYA VYKEETLQSQ RYHEQSLNKE TKSMAQESSD
1110 1120 1130 1140 1150
IFISDVSRVE KGEEVIKIPL RGPHSPYELS FFGLTASARL RGCRVEQDSV
1160 1170 1180 1190 1200
NSVVICEDPH DKHQKLLIAA TVNVNSAGNS IIARETTLLP NIHGLYSMLA
1210 1220 1230 1240 1250
LLFAPVAELR CHDKNTHYIG ALCGLGANDN GESIFPDHDL ELSFDIKFDA
1260 1270 1280 1290 1300
EDLLLINSVR FLINTAIGIE SETIEHPIDK VSEIQRYARE KLLNLINKQR
1310 1320 1330 1340 1350
EDKTPESYPK EFLWNQVKDD YLFDCGYEEK PNHLYTYHKG IFLIKEKEID
1360 1370 1380 1390 1400
PRILEQRQKL EELHKLTGRS IIPFTTEVEC PVCLVRCRHP RALYLHCETP
1410
QHKNWFTQIF KN
Length:1,412
Mass (Da):162,142
Last modified:November 13, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i45F47E8279808FF5
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AB840996 mRNA Translation: BAN82537.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB840996 mRNA Translation: BAN82537.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Phylogenomic databases

OMAiDPCRTVY

Family and domain databases

CDDicd04508, TUDOR, 1 hit
Gene3Di2.40.50.90, 1 hit
3.40.50.300, 2 hits
InterProiView protein in InterPro
IPR011545, DEAD/DEAH_box_helicase_dom
IPR007502, Helicase-assoc_dom
IPR014001, Helicase_ATP-bd
IPR001650, Helicase_C
IPR027417, P-loop_NTPase
IPR035437, SNase_OB-fold_sf
IPR002999, Tudor
PfamiView protein in Pfam
PF00270, DEAD, 1 hit
PF04408, HA2, 1 hit
PF00271, Helicase_C, 1 hit
PF00567, TUDOR, 1 hit
SMARTiView protein in SMART
SM00487, DEXDc, 1 hit
SM00847, HA2, 1 hit
SM00490, HELICc, 1 hit
SM00333, TUDOR, 1 hit
SUPFAMiSSF52540, SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS51192, HELICASE_ATP_BIND_1, 1 hit
PS51194, HELICASE_CTER, 1 hit
PS50304, TUDOR, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiT2HQX6_HYDVU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: T2HQX6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 13, 2013
Last sequence update: November 13, 2013
Last modified: September 29, 2021
This is version 28 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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