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Protein
Submitted name:

Sixteen Heme Cytochrome

Gene

hmcA

Organism
Desulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi65Iron (heme 2 axial ligand); via tele nitrogenCombined sources1
Metal bindingi68Iron (heme 4 axial ligand); via tele nitrogenCombined sources1
Metal bindingi83Iron (heme 2 axial ligand); via tele nitrogenCombined sources1
Metal bindingi111Iron (heme 3 axial ligand); via tele nitrogenCombined sources1
Metal bindingi118Iron (heme 4 axial ligand); via tele nitrogenCombined sources1
Binding sitei134Heme 3 (covalent)Combined sources1
Metal bindingi138Iron (heme 3 axial ligand); via tele nitrogenCombined sources1
Metal bindingi159Iron (heme 6 axial ligand); via tele nitrogenCombined sources1
Metal bindingi162Iron (heme 7 axial ligand); via tele nitrogenCombined sources1
Binding sitei178Heme 6 (covalent)Combined sources1
Metal bindingi182Iron (heme 6 axial ligand); via tele nitrogenCombined sources1
Metal bindingi183Iron (heme 9 axial ligand); via tele nitrogenCombined sources1
Binding sitei202Heme 9 (covalent)Combined sources1
Binding sitei205Heme 9 (covalent)Combined sources1
Metal bindingi206Iron (heme 9 axial ligand); via tele nitrogenCombined sources1
Metal bindingi229Iron (heme 1 axial ligand); via tele nitrogenCombined sources1
Binding sitei235Heme 7 (covalent)Combined sources1
Metal bindingi236Iron (heme 7 axial ligand); via tele nitrogenCombined sources1
Binding sitei251Heme 1 (covalent)Combined sources1
Metal bindingi255Iron (heme 1 axial ligand); via tele nitrogenCombined sources1
Metal bindingi309Iron (heme 8 axial ligand); via tele nitrogenCombined sources1
Metal bindingi312Iron (heme 11 axial ligand); via tele nitrogenCombined sources1
Binding sitei319Heme 8 (covalent)Combined sources1
Metal bindingi323Iron (heme 8 axial ligand); via tele nitrogenCombined sources1
Metal bindingi324Iron (heme 5 axial ligand); via tele nitrogenCombined sources1
Binding sitei335Heme 5 (covalent)Combined sources1
Binding sitei339Heme 5 (covalent)Combined sources1
Metal bindingi340Iron (heme 5 axial ligand); via tele nitrogenCombined sources1
Metal bindingi358Iron (heme 10 axial ligand); via tele nitrogenCombined sources1
Metal bindingi370Iron (heme 11 axial ligand); via tele nitrogenCombined sources1
Binding sitei380Heme 12 (covalent)Combined sources1
Binding sitei383Heme 12 (covalent)Combined sources1
Metal bindingi384Iron (heme 12 axial ligand); via tele nitrogenCombined sources1
Binding sitei397Heme 10 (covalent)Combined sources1
Binding sitei400Heme 10 (covalent)Combined sources1
Metal bindingi401Iron (heme 10 axial ligand); via tele nitrogenCombined sources1
Metal bindingi416ZincCombined sources1
Metal bindingi419ZincCombined sources1
Metal bindingi464Iron (heme 14 axial ligand); via tele nitrogenCombined sources1
Metal bindingi485Iron (heme 12 axial ligand); via tele nitrogenCombined sources1
Binding sitei492Heme 14 (covalent)Combined sources1
Binding sitei495Heme 14 (covalent)Combined sources1
Metal bindingi496Iron (heme 14 axial ligand); via tele nitrogenCombined sources1
Metal bindingi497Iron (heme 16 axial ligand); via tele nitrogenCombined sources1
Binding sitei508Heme 16 (covalent)Combined sources1
Metal bindingi512Iron (heme 16 axial ligand); via tele nitrogenCombined sources1
Metal bindingi531Iron (heme 15 axial ligand); via tele nitrogenCombined sources1
Binding sitei534Heme 13 (covalent)Combined sources1
Binding sitei537Heme 13 (covalent)Combined sources1
Metal bindingi538Iron (heme 13 axial ligand); via tele nitrogenCombined sources1
Metal bindingi554Iron (heme 15 axial ligand); via tele nitrogenCombined sources1

GO - Molecular functioni

Keywordsi

LigandHemeCombined sourcesSAAS annotation, Iron, Metal-binding, ZincCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
Sixteen Heme CytochromeImported
Gene namesi
Name:hmcAImported
ORF Names:DGI_0715Imported
OrganismiDesulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759)Imported
Taxonomic identifieri1121448 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
Proteomesi
  • UP000016587 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 29Sequence analysisAdd BLAST29
ChainiPRO_500458816730 – 559Sequence analysisAdd BLAST530

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi290N-linked (GlcNAc...) asparagineCombined sources1

Structurei

3D structure databases

SMRiT2G9Q2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini74 – 559MULTIHEME_CYTCInterPro annotationAdd BLAST486

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

OrthoDBiPOG091H0RGX

Family and domain databases

InterProiView protein in InterPro
IPR002322 Cyt_c_III
IPR020942 Cyt_c_III_dom
IPR011031 Multihaem_cyt
IPR036280 Multihaem_cyt_sf
IPR029467 OmcB
PfamiView protein in Pfam
PF02085 Cytochrom_CIII, 3 hits
PF14522 Cytochrome_C7, 1 hit
PRINTSiPR00609 CYTOCHROMEC3
SUPFAMiSSF48695 SSF48695, 1 hit
PROSITEiView protein in PROSITE
PS51008 MULTIHEME_CYTC, 1 hit

Sequencei

Sequence statusi: Complete.

T2G9Q2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTQRKRAARW VGIPCAILFL TVPFISATAS TPGPASTAEP KVDAIVIDTA
60 70 80 90 100
AVFGKLEQPG VVFYHEKHTT ALEKMAKDCT SCHVETEGKL SFKFARTVDP
110 120 130 140 150
TSKNAMAEQY HANCMACHEK VVGSYPTAPQ AAECKRCHVG PGVEGATVTP
160 170 180 190 200
KPSLDLNLHG RHVVAEAKRL QVKEDESCKA CHHTYDEAQK KLVYAKGEEG
210 220 230 240 250
SCVYCHKQEP LPSPVQQDRV VPSTRDASHE SCVNCHLSTR KAQTESGPVL
260 270 280 290 300
CVGCHTAEAQ AAWKKTAETP RLFRGQPDAT LLVAGAATAN GTVDVNWAAA
310 320 330 340 350
GPGPVAFDHK AHEGFVGNCV TCHHPTQTGG SLAACGVACH TTTGSKDGNF
360 370 380 390 400
VTTAQSAHQL GVTTSCVGCH TTQANARKEC AGCHAPMQKT ALSQNSCIQC
410 420 430 440 450
HEAGFPTSGT QTLGKEEREA TAAKILAAKD EKPKTVPLEN VPEKLTLNYM
460 470 480 490 500
DEKGDEWQAA EFPHRKIYQK LVEEAAKSPM ANHFHGDALT MCSGCHHNAK
510 520 530 540 550
PSLNPPKCAS CHSKPFQERT ANQPGLKGAF HNQCIGCHQE MQVNPKATDC

QGCHKPKNS
Length:559
Mass (Da):59,891
Last modified:November 13, 2013 - v1
Checksum:iD487CF7CD20AD6B2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP006585 Genomic DNA Translation: AGW12617.1

Genome annotation databases

EnsemblBacteriaiAGW12617; AGW12617; DGI_0715
KEGGidgg:DGI_0715
PATRICifig|1121448.10.peg.723

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP006585 Genomic DNA Translation: AGW12617.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Z1NX-ray2.10X1-559[»]
SMRiT2G9Q2
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAGW12617; AGW12617; DGI_0715
KEGGidgg:DGI_0715
PATRICifig|1121448.10.peg.723

Phylogenomic databases

OrthoDBiPOG091H0RGX

Family and domain databases

InterProiView protein in InterPro
IPR002322 Cyt_c_III
IPR020942 Cyt_c_III_dom
IPR011031 Multihaem_cyt
IPR036280 Multihaem_cyt_sf
IPR029467 OmcB
PfamiView protein in Pfam
PF02085 Cytochrom_CIII, 3 hits
PF14522 Cytochrome_C7, 1 hit
PRINTSiPR00609 CYTOCHROMEC3
SUPFAMiSSF48695 SSF48695, 1 hit
PROSITEiView protein in PROSITE
PS51008 MULTIHEME_CYTC, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiT2G9Q2_DESGG
AccessioniPrimary (citable) accession number: T2G9Q2
Entry historyiIntegrated into UniProtKB/TrEMBL: November 13, 2013
Last sequence update: November 13, 2013
Last modified: October 10, 2018
This is version 32 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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