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UniProtKB - T0H2D0 (T0H2D0_9SPHN)

Entry version 28 (07 Oct 2020)
Sequence version 1 (16 Oct 2013)
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Protein

LPD22 domain-containing protein

Gene

L485_01010

Organism
Sphingobium baderi LL03
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
LPD22 domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:L485_01010Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSphingobium baderi LL03Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1114964 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingobium ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000015524 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		1114964.L485_01010

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini39 – 129LPD22InterPro annotationAdd BLAST91

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 26DisorderedSequence analysisAdd BLAST26

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili712 – 733Sequence analysisAdd BLAST22
Coiled coili899 – 919Sequence analysisAdd BLAST21
Coiled coili1196 – 1220Sequence analysisAdd BLAST25
Coiled coili1396 – 1416Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502ZABJ, Bacteria

Database of Orthologous Groups

More...OrthoDBi		142817at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR040738, LPD22

Pfam protein domain database

More...Pfami		View protein in Pfam
PF18834, LPD22, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

T0H2D0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATDPFKYLD SMRAKSSQPV QGDDPFEAEL RQQRDDELAY RIKVARPDEE 
        60         70         80         90        100
ARARALAEPR GLAPSAVASN LPAFEAEARA AKAKNVMSQY PAIGRWSAKP 
       110        120        130        140        150
GNAAIAADDY DNLSLFGKAF YGLKNFGKTL EAGTWTALGG IYGAIGGLAE 
       160        170        180        190        200
NLDALSPSSD AERRAGVRSL PRLVADYALG LQASDKTAAA KARPNVENWL 
       210        220        230        240        250
ARNLLQGVES LPTTAASVGV GVVAGPTAGA SVMGASVAGN EYAEARSKGL 
       260        270        280        290        300
SVPRSAIYGA SQGAVEFITE KLPVSRLVGD LAEKSPIGKT LMRQLAAEIP 
       310        320        330        340        350
GEQAATVLQD LNEWATLNPD KTIREFIAER PAAAAETLAA TIGGVGTTVA 
       360        370        380        390        400
VTKAAERTAR IAGDMIDRRQ QAERASLNAA FLEQVADATG KAKTMGRSPD 
       410        420        430        440        450
AVADLVQQLG DDTGADRVFI PAEALRAYEQ SDGYSGEFDS YREAVDEAYA 
       460        470        480        490        500
TGGDLVLPVG ELTRIAITPA WSALKDDMRL SAGGMSFNEA RTFDEAMADV 
       510        520        530        540        550
MDQLSEQAAQ EAEAARVAQE PRQKLQQSIA DKLMNAGFTP ATAIQQAELL 
       560        570        580        590        600
TQREATRAAR MGRDLTGQEF DPVEVRQILP AALAQIQAAD NTDILIETMK 
       610        620        630        640        650
GGKEAKTALG PSLMDFISRG GGIEDTGGDL KAMGADAWHK GKPGKRKLVR 
       660        670        680        690        700
SDSSNQASID EGGLGINEYG ADQWAQRAWE AGYFPEFGDT RPTANDLLDA 
       710        720        730        740        750
IAEGVAGRDR HLVAQEKALR DAAQELRAML ENRGIDPDAA SRKEIKDAIA 
       760        770        780        790        800
AYQQEAEGRA FDQGKDDAPR GRIVFPDGGN AAAVIELFQS RDQSTFLHET 
       810        820        830        840        850
GHLWLEQLRA DAMEESASDQ LKVDWRVVQD WFAANGHPLE DGAIPVDAHE 
       860        870        880        890        900
LWARGVERYL MEGKAPTPVL RRAFEQFKSW LVSIYRSVDR LRAPITPEIR 
       910        920        930        940        950
GVMDRLIATD EEIEQARQEQ GIEALFAEKP ATMTEEEFGA YQASTEQARG 
       960        970        980        990       1000
EAHDALLARV MNAVKRRVTK EYKDRREAIA ADVAAQIDAR PEFRALRQAR 
      1010       1020       1030       1040       1050
ETPLDSTWIR EALGEDAPAM LPKNVPPIFK DNGANPDEVA ELSGFTSGDE 
      1060       1070       1080       1090       1100
MVRALMGVET ARRQLREGGD QRSVRRALID QETDALMMER YGDPFTDGSI 
      1110       1120       1130       1140       1150
EEEALAIIHN DQQGEVIAAE MRVLARSTGQ RVTPYRIAKD WAARSVRDGR 
      1160       1170       1180       1190       1200
VADVASRAVI QRYQRAAAKA GKAAMDAIIA GDNAEAFRQK QAQMLNNALV 
      1210       1220       1230       1240       1250
SEAKRAADEI EAAVKRMSKV AAKRTMETVD QDYLERAQGL LEQVDLKQRS 
      1260       1270       1280       1290       1300
QRSIDRQESF EAWAREQEEA GRDMIVPPSF AATLGTTNWS RLTVDQLLGL 
      1310       1320       1330       1340       1350
DAAVKQIMHL GRLKQKLLDA KEERDYEAVV GEALAAAGGL PQKPSGVSFD 
      1360       1370       1380       1390       1400
EPGWFDKAKS FVLGLDAAML KMETVFDWLD QGPNGVFNRV VFQRFVDAQE 
      1410       1420       1430       1440       1450
QRRKRTADMM RRLEDARMKI PEAIRKRWGQ KVTLTMIDPE TGRPAVMTRD 
      1460       1470       1480       1490       1500
KLIAMALNMG NDGNARKLAG GYNWNEQSIL DALNAELTPE EWQFVQDTWD 
      1510       1520       1530       1540       1550
IVDTLWPDIA ALERRVNGVD PEKVEARPLQ TGAGELRGGY YPVVYDPTRS 
      1560       1570       1580       1590       1600
LDTERQNAVS GDKLFESAYR RANTRAGSTN ERTNVERPVM LSLSVISRHI 
      1610       1620       1630       1640       1650
GEVIHDITHR EAVIDAHRFL NDKRVIKAVR DTMGEHIQKQ FNPWLQHIAN 
      1660       1670       1680       1690       1700
EFAYDAQGMG SVEKLVKGLR TNATFVGMGY RASTTLMQLA GVFNTAERIG 
      1710       1720       1730       1740       1750
SRWAAEGVYR FAKAPVETMR FVLESSQEVA ARTETMDRDI RDAIQREQSK 
      1760       1770       1780       1790       1800
LGFLSDVKRF GFYFIGMMDR FVSTAGWIGA YNKALNEGMA DSDAIAFADK 
      1810       1820       1830       1840       1850
TIRQSQGSGA AKDLAAIQRG KGAAGEAGKL LTMFYSYMSA FYQRQRTLAR 
      1860       1870       1880       1890       1900
DYGTAFRTGD VQDFPGLLAR TVMLYFLPAL AAELIAGRGP DDDEDWTQWV 
      1910       1920       1930       1940       1950
LETVGLAALG PIPLVRDVAG GLASGFGYNF TPASGVGNSL VNAAKDIKRL 
      1960       1970       1980       1990       2000
VEGEETKRAT RNVLETAGYL GAPVTGQMAA SAQFLVDVGA GDQHPETFGD 
      2010 
WWTGLTKGKI QE
Length:2,012
Mass (Da):219,927
Last modified:October 16, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1860DC2D5760222D
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
ATIB01000017 Genomic DNA Translation: EQB06233.1

NCBI Reference Sequences

More...RefSeqi		WP_021243226.1, NZ_KQ130471.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		EQB06233; EQB06233; L485_01010

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1114964.3.peg.177

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ATIB01000017 Genomic DNA Translation: EQB06233.1
RefSeqiWP_021243226.1, NZ_KQ130471.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi1114964.L485_01010

Genome annotation databases

EnsemblBacteriaiEQB06233; EQB06233; L485_01010
PATRICifig|1114964.3.peg.177

Phylogenomic databases

eggNOGiENOG502ZABJ, Bacteria
OrthoDBi142817at2

Family and domain databases

InterProiView protein in InterPro
IPR040738, LPD22
PfamiView protein in Pfam
PF18834, LPD22, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiT0H2D0_9SPHN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: T0H2D0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: October 7, 2020
This is version 28 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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