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UniProtKB - S4Z1Z1 (S4Z1Z1_HORVV)

Entry version 58 (12 Aug 2020)
Sequence version 1 (16 Oct 2013)
Previous versions | rss
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Protein

50S ribosomal protein L33, chloroplastic

Gene

rpl33

Organism
Hordeum vulgare subsp. vulgare (Domesticated barley)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationImportedARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
50S ribosomal protein L33, chloroplasticUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rpl33UniRule annotationImported
Synonyms:4525070Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlastid; ChloroplastImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHordeum vulgare subsp. vulgare (Domesticated barley)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri112509 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Pooideae › Triticodae › Triticeae › Hordeinae › Hordeum ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000011116 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

ChloroplastImported, Plastid

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		4513.AGP50775

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		S4Z1Z1

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL33 family.UniRule annotationARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502S7HT, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_190949_3_0_1

Identification of Orthologs from Complete Genome Data

More...OMAi		IFECISC

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.20.28.120, 1 hit

HAMAP database of protein families

More...HAMAPi		MF_00294, Ribosomal_L33, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR038584, L33_sf
IPR001705, Ribosomal_L33
IPR018264, Ribosomal_L33_CS
IPR011332, Ribosomal_zn-bd

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00471, Ribosomal_L33, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF57829, SSF57829, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR01023, rpmG_bact, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00582, RIBOSOMAL_L33, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

S4Z1Z1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAKGKDVRIR VILECISCVR KGANEESTGI SRYSTQKNRH NTPGQLEFKK 
        60 
FCRYCRKHTT HHEIKK
Length:66
Mass (Da):7,748
Last modified:October 16, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBF943FBD40992E45
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A287EC28A0A287EC28_HORVV
PSI-J
4525070
52Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
KC912687 Genomic DNA Translation: AGP50775.1
KT962228 Genomic DNA Translation: AMA20266.1
MN171386 Genomic DNA Translation: QGL07952.1
MN171387 Genomic DNA Translation: QGL08035.1
MN171388 Genomic DNA Translation: QGL08118.1
MN171389 Genomic DNA Translation: QGL08201.1
MN171390 Genomic DNA Translation: QGL08284.1
MN171391 Genomic DNA Translation: QGL08367.1
MN171392 Genomic DNA Translation: QGL08450.1

NCBI Reference Sequences

More...RefSeqi		YP_874673.1, NC_008590.1

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		AGP50775; AGP50775; AGP50775
HORVU0Hr1G026120.1; HORVU0Hr1G026120.1; HORVU0Hr1G026120
HORVU0Hr1G028420.1; HORVU0Hr1G028420.1; HORVU0Hr1G028420
HORVU0Hr1G029870.1; HORVU0Hr1G029870.1; HORVU0Hr1G029870
HORVU0Hr1G032970.1; HORVU0Hr1G032970.1; HORVU0Hr1G032970
HORVU0Hr1G033490.1; HORVU0Hr1G033490.1; HORVU0Hr1G033490
HORVU0Hr1G033750.1; HORVU0Hr1G033750.1; HORVU0Hr1G033750
HORVU0Hr1G034330.1; HORVU0Hr1G034330.1; HORVU0Hr1G034330
HORVU0Hr1G035190.1; HORVU0Hr1G035190.1; HORVU0Hr1G035190
HORVU0Hr1G036920.1; HORVU0Hr1G036920.1; HORVU0Hr1G036920
HORVU0Hr1G037450.1; HORVU0Hr1G037450.1; HORVU0Hr1G037450
HORVU0Hr1G037600.2; HORVU0Hr1G037600.2; HORVU0Hr1G037600
HORVU0Hr1G037880.1; HORVU0Hr1G037880.1; HORVU0Hr1G037880
HORVU5Hr1G065090.1; HORVU5Hr1G065090.1; HORVU5Hr1G065090
HORVU6Hr1G022970.1; HORVU6Hr1G022970.1; HORVU6Hr1G022970
HORVU6Hr1G037200.1; HORVU6Hr1G037200.1; HORVU6Hr1G037200
HORVU6Hr1G049350.1; HORVU6Hr1G049350.1; HORVU6Hr1G049350

Database of genes from NCBI RefSeq genomes

More...GeneIDi		4525070

Gramene; a comparative resource for plants

More...Gramenei		AGP50775; AGP50775; AGP50775
HORVU0Hr1G026120.1; HORVU0Hr1G026120.1; HORVU0Hr1G026120
HORVU0Hr1G028420.1; HORVU0Hr1G028420.1; HORVU0Hr1G028420
HORVU0Hr1G029870.1; HORVU0Hr1G029870.1; HORVU0Hr1G029870
HORVU0Hr1G032970.1; HORVU0Hr1G032970.1; HORVU0Hr1G032970
HORVU0Hr1G033490.1; HORVU0Hr1G033490.1; HORVU0Hr1G033490
HORVU0Hr1G033750.1; HORVU0Hr1G033750.1; HORVU0Hr1G033750
HORVU0Hr1G034330.1; HORVU0Hr1G034330.1; HORVU0Hr1G034330
HORVU0Hr1G035190.1; HORVU0Hr1G035190.1; HORVU0Hr1G035190
HORVU0Hr1G036920.1; HORVU0Hr1G036920.1; HORVU0Hr1G036920
HORVU0Hr1G037450.1; HORVU0Hr1G037450.1; HORVU0Hr1G037450
HORVU0Hr1G037600.2; HORVU0Hr1G037600.2; HORVU0Hr1G037600
HORVU0Hr1G037880.1; HORVU0Hr1G037880.1; HORVU0Hr1G037880
HORVU5Hr1G065090.1; HORVU5Hr1G065090.1; HORVU5Hr1G065090
HORVU6Hr1G022970.1; HORVU6Hr1G022970.1; HORVU6Hr1G022970
HORVU6Hr1G037200.1; HORVU6Hr1G037200.1; HORVU6Hr1G037200
HORVU6Hr1G049350.1; HORVU6Hr1G049350.1; HORVU6Hr1G049350

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KC912687 Genomic DNA Translation: AGP50775.1
KT962228 Genomic DNA Translation: AMA20266.1
MN171386 Genomic DNA Translation: QGL07952.1
MN171387 Genomic DNA Translation: QGL08035.1
MN171388 Genomic DNA Translation: QGL08118.1
MN171389 Genomic DNA Translation: QGL08201.1
MN171390 Genomic DNA Translation: QGL08284.1
MN171391 Genomic DNA Translation: QGL08367.1
MN171392 Genomic DNA Translation: QGL08450.1
RefSeqiYP_874673.1, NC_008590.1

3D structure databases

SMRiS4Z1Z1
ModBaseiSearch...

Protein-protein interaction databases

STRINGi4513.AGP50775

Genome annotation databases

EnsemblPlantsiAGP50775; AGP50775; AGP50775
HORVU0Hr1G026120.1; HORVU0Hr1G026120.1; HORVU0Hr1G026120
HORVU0Hr1G028420.1; HORVU0Hr1G028420.1; HORVU0Hr1G028420
HORVU0Hr1G029870.1; HORVU0Hr1G029870.1; HORVU0Hr1G029870
HORVU0Hr1G032970.1; HORVU0Hr1G032970.1; HORVU0Hr1G032970
HORVU0Hr1G033490.1; HORVU0Hr1G033490.1; HORVU0Hr1G033490
HORVU0Hr1G033750.1; HORVU0Hr1G033750.1; HORVU0Hr1G033750
HORVU0Hr1G034330.1; HORVU0Hr1G034330.1; HORVU0Hr1G034330
HORVU0Hr1G035190.1; HORVU0Hr1G035190.1; HORVU0Hr1G035190
HORVU0Hr1G036920.1; HORVU0Hr1G036920.1; HORVU0Hr1G036920
HORVU0Hr1G037450.1; HORVU0Hr1G037450.1; HORVU0Hr1G037450
HORVU0Hr1G037600.2; HORVU0Hr1G037600.2; HORVU0Hr1G037600
HORVU0Hr1G037880.1; HORVU0Hr1G037880.1; HORVU0Hr1G037880
HORVU5Hr1G065090.1; HORVU5Hr1G065090.1; HORVU5Hr1G065090
HORVU6Hr1G022970.1; HORVU6Hr1G022970.1; HORVU6Hr1G022970
HORVU6Hr1G037200.1; HORVU6Hr1G037200.1; HORVU6Hr1G037200
HORVU6Hr1G049350.1; HORVU6Hr1G049350.1; HORVU6Hr1G049350
GeneIDi4525070
GrameneiAGP50775; AGP50775; AGP50775
HORVU0Hr1G026120.1; HORVU0Hr1G026120.1; HORVU0Hr1G026120
HORVU0Hr1G028420.1; HORVU0Hr1G028420.1; HORVU0Hr1G028420
HORVU0Hr1G029870.1; HORVU0Hr1G029870.1; HORVU0Hr1G029870
HORVU0Hr1G032970.1; HORVU0Hr1G032970.1; HORVU0Hr1G032970
HORVU0Hr1G033490.1; HORVU0Hr1G033490.1; HORVU0Hr1G033490
HORVU0Hr1G033750.1; HORVU0Hr1G033750.1; HORVU0Hr1G033750
HORVU0Hr1G034330.1; HORVU0Hr1G034330.1; HORVU0Hr1G034330
HORVU0Hr1G035190.1; HORVU0Hr1G035190.1; HORVU0Hr1G035190
HORVU0Hr1G036920.1; HORVU0Hr1G036920.1; HORVU0Hr1G036920
HORVU0Hr1G037450.1; HORVU0Hr1G037450.1; HORVU0Hr1G037450
HORVU0Hr1G037600.2; HORVU0Hr1G037600.2; HORVU0Hr1G037600
HORVU0Hr1G037880.1; HORVU0Hr1G037880.1; HORVU0Hr1G037880
HORVU5Hr1G065090.1; HORVU5Hr1G065090.1; HORVU5Hr1G065090
HORVU6Hr1G022970.1; HORVU6Hr1G022970.1; HORVU6Hr1G022970
HORVU6Hr1G037200.1; HORVU6Hr1G037200.1; HORVU6Hr1G037200
HORVU6Hr1G049350.1; HORVU6Hr1G049350.1; HORVU6Hr1G049350

Phylogenomic databases

eggNOGiENOG502S7HT, Eukaryota
HOGENOMiCLU_190949_3_0_1
OMAiIFECISC

Family and domain databases

Gene3Di2.20.28.120, 1 hit
HAMAPiMF_00294, Ribosomal_L33, 1 hit
InterProiView protein in InterPro
IPR038584, L33_sf
IPR001705, Ribosomal_L33
IPR018264, Ribosomal_L33_CS
IPR011332, Ribosomal_zn-bd
PfamiView protein in Pfam
PF00471, Ribosomal_L33, 1 hit
SUPFAMiSSF57829, SSF57829, 1 hit
TIGRFAMsiTIGR01023, rpmG_bact, 1 hit
PROSITEiView protein in PROSITE
PS00582, RIBOSOMAL_L33, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiS4Z1Z1_HORVV
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: S4Z1Z1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: August 12, 2020
This is version 58 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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