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Protein

Probable DNA-directed RNA polymerase subunit delta

Gene

rpoE

Organism
Lactobacillus paracasei subsp. paracasei Lpp225
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling.UniRule annotationSAAS annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferaseUniRule annotationSAAS annotationImported, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
Probable DNA-directed RNA polymerase subunit deltaUniRule annotationSAAS annotation
Alternative name(s):
RNAP delta factorUniRule annotation
Gene namesi
Name:rpoEUniRule annotation
ORF Names:Lpp225_0366Imported
OrganismiLactobacillus paracasei subsp. paracasei Lpp225Imported
Taxonomic identifieri1256225 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus
Proteomesi
  • UP000014270 Componenti: Unassembled WGS sequence

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseUniRule annotationSAAS annotationImported

Interactioni

Subunit structurei

RNAP is composed of a core of 2 alpha, a beta and a beta' subunits. The core is associated with a delta subunit and one of several sigma factors.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini18 – 84HARE-HTHInterPro annotationAdd BLAST67

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi108 – 226Asp/Glu-rich (acidic)UniRule annotationAdd BLAST119

Sequence similaritiesi

Belongs to the RpoE family.UniRule annotationSAAS annotation

Family and domain databases

Gene3Di1.10.10.1250, 1 hit
HAMAPiMF_00357 RNApol_bact_RpoE, 1 hit
InterProiView protein in InterPro
IPR007759 HB1/Asxl_HTH
IPR038087 RNAP_delta_sf
IPR029757 RpoE
PfamiView protein in Pfam
PF05066 HARE-HTH, 1 hit
TIGRFAMsiTIGR04567 RNAP_delt_lowGC, 1 hit

Sequencei

Sequence statusi: Complete.

S2NG94-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MYRLKLKAFA NADKSELSMI EVAHEILKEK GDTMAFVDLA NEIQNYLGKR
60 70 80 90 100
DEEIRERLPQ FYTDLNVDGS FISLGDNVWG LRAWYPYDSV DEEVNHPEDE
110 120 130 140 150
EEAPRRKKRK KVNAFLADVA DDDDVIDYND DDPEDEDLDA DSDDDDDFDD
160 170 180 190 200
DDSGFHDKVG KTTDTDDDSD DDPDDGLPDG IEGQLAEFGD DDSDDDDDND
210 220
DITADFSDDD DDDSDSDDDD DSDTKK
Length:226
Mass (Da):25,612
Last modified:September 18, 2013 - v1
Checksum:iC14FB638D45036E7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ANMM01000002 Genomic DNA Translation: EPC38895.1

Genome annotation databases

EnsemblBacteriaiEPC38895; EPC38895; Lpp225_0366
PATRICifig|1256225.3.peg.373

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ANMM01000002 Genomic DNA Translation: EPC38895.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiEPC38895; EPC38895; Lpp225_0366
PATRICifig|1256225.3.peg.373

Family and domain databases

Gene3Di1.10.10.1250, 1 hit
HAMAPiMF_00357 RNApol_bact_RpoE, 1 hit
InterProiView protein in InterPro
IPR007759 HB1/Asxl_HTH
IPR038087 RNAP_delta_sf
IPR029757 RpoE
PfamiView protein in Pfam
PF05066 HARE-HTH, 1 hit
TIGRFAMsiTIGR04567 RNAP_delt_lowGC, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiS2NG94_LACPA
AccessioniPrimary (citable) accession number: S2NG94
Entry historyiIntegrated into UniProtKB/TrEMBL: September 18, 2013
Last sequence update: September 18, 2013
Last modified: March 28, 2018
This is version 26 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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