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Entry version 71 (17 Jun 2020)
Sequence version 1 (18 Sep 2013)
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Protein
Submitted name:

Hcp family protein

Gene

hcp

Organism
Acinetobacter baumannii
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Protein family/group databases

Transport Classification Database

More...
TCDBi
3.A.23.4.1 the type vi symbiosis/virulence secretory system (t6ss) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Hcp family proteinImported
Submitted name:
Hcp1 family type VI secretion system effectorImported
Submitted name:
TssDImported
Submitted name:
Type VI secretion system effectorImported
Submitted name:
Type VI secretion system effector, Hcp1 familyImported
Submitted name:
Type VI secretion system effector, Hcp1 family proteinImported
Submitted name:
Type VI secretion system tube protein HcpImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:hcpImported
Synonyms:hcp1Imported
ORF Names:A7M90_06260Imported, A9843_10355Imported, AA954_08005Imported, ABUW_2578Imported, BGC29_07460Imported, CEJ64_11835Imported, CJU83_11985Imported, CSB70_1139Imported, DLI67_11125Imported, DLI69_10290Imported, DLI75_18320Imported, DVA79_16275Imported, E2533_04665Imported, E2536_11630Imported, E5294_12640Imported, E5979_12245Imported, EA667_012055Imported, EA685_02560Imported, EA686_02235Imported, EA746_015070Imported, EKS29_05005Imported, EWO92_13640Imported, EWO96_13110Imported, EWP49_12585Imported, FD887_17800Imported, FD913_18655Imported, FJU36_12340Imported, FJU42_19300Imported, FJU79_03015Imported, FJV14_06495Imported, LV38_02303Imported, NCTC13420_01567Imported, NT90_17085Imported, SAMEA104305318_01418Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiAcinetobacter baumanniiImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri470 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesMoraxellaceaeAcinetobacterAcinetobacter calcoaceticus/baumannii complex
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000339528 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000315888 Componenti: Unassembled WGS sequence
  • UP000272206 Componenti: Chromosome
  • UP000297782 Componenti: Unassembled WGS sequence
  • UP000326760 Componenti: Unassembled WGS sequence
  • UP000323197 Componenti: Unassembled WGS sequence
  • UP000318526 Componenti: Unassembled WGS sequence
  • UP000310129 Componenti: Unassembled WGS sequence
  • UP000252694 Componenti: Unassembled WGS sequence
  • UP000320149 Componenti: Unassembled WGS sequence
  • UP000257523 Componenti: Chromosome
  • UP000254993 Componenti: Unassembled WGS sequence
  • UP000031035 Componenti: Unassembled WGS sequence
  • UP000280982 Componenti: Unassembled WGS sequence
  • UP000292122 Componenti: Unassembled WGS sequence
  • UP000271711 Componenti: Unassembled WGS sequence
  • UP000280073 Componenti: Unassembled WGS sequence
  • UP000253255 Componenti: Unassembled WGS sequence
  • UP000078586 Componenti: Unassembled WGS sequence
  • UP000032746 Componenti: Chromosome
  • UP000179937 Componenti: Unassembled WGS sequence
  • UP000094982 Componenti: Unassembled WGS sequence
  • UP000306363 Componenti: Unassembled WGS sequence
  • UP000297480 Componenti: Unassembled WGS sequence
  • UP000292081 Componenti: Unassembled WGS sequence
  • UP000307835 Componenti: Unassembled WGS sequence
  • UP000326007 Componenti: Chromosome
  • UP000309525 Componenti: Unassembled WGS sequence
  • UP000093852 Componenti: Unassembled WGS sequence
  • UP000076314 Componenti: Unassembled WGS sequence
  • UP000291489 Componenti: Unassembled WGS sequence
  • UP000320596 Componenti: Unassembled WGS sequence
  • UP000278858 Componenti: Unassembled WGS sequence
  • UP000215800 Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
470.IX87_03965

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4108RAE Bacteria
COG3157 LUCA

KEGG Orthology (KO)

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KOi
K11903

Database of Orthologous Groups

More...
OrthoDBi
1153621at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.30.110.20, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR036624 Hcp1-lik_sf
IPR008514 T6SS_Hcp

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05638 T6SS_HCP, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF141452 SSF141452, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR03344 VI_effect_Hcp1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

R9RIP4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKDIYVEFRG KYKVDGESRD SEHKGWLEVN SWSHNIRQPK SATSSSVGGH
60 70 80 90 100
TAERVEHSDM VFVKDLDATS PKLWEACSAG YTFDEVQIDF YRANGDKRIK
110 120 130 140 150
YLQIKLKHVL VSSVTPTVNE EGVPTEAFGL KYAAVEWTYN QQDINGTAKG
160
AVTKKWSLSN NTASYAA
Length:167
Mass (Da):18,743
Last modified:September 18, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i55A6EDE244BA9E97
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
KC432605 Genomic DNA Translation: AGM48620.1
CP008706 Genomic DNA Translation: AKA32302.1
KR109191 Genomic DNA Translation: AKR15107.1
KT334324 Genomic DNA Translation: ALD10108.1
CP027178 Genomic DNA Translation: AVI32547.1
NXGW01000057 Genomic DNA Translation: KAA0673300.1
VYJD01000001 Genomic DNA Translation: KAA8930250.1
VYJB01000001 Genomic DNA Translation: KAA8936308.1
JSAO01000080 Genomic DNA Translation: KHO14203.1
LRDW01000020 Genomic DNA Translation: KZA24548.1
LZVZ01000064 Genomic DNA Translation: OBN24745.1
LDDY01000007 Genomic DNA Translation: OBR18712.1
MDWM01000140 Genomic DNA Translation: ODP68813.1
LYKI01000034 Genomic DNA Translation: OIG70666.1
NKKF01000048 Genomic DNA Translation: PAM49921.1
CP039930 Genomic DNA Translation: QCO79206.1
CP045541 Genomic DNA Translation: QFV03592.1
QPHZ01000026 Genomic DNA Translation: RCU27867.1
RFDJ01000002 Genomic DNA Translation: RSR11971.1
RFDI01000065 Genomic DNA Translation: RSR63012.1
RXYO01000026 Genomic DNA Translation: RTY12199.1
SEUD01000008 Genomic DNA Translation: RYL15839.1
SEUE01000007 Genomic DNA Translation: RYL29040.1
SEUG01000005 Genomic DNA Translation: RYL43780.1
UFMQ01000004 Genomic DNA Translation: SST21267.1
UFRX01000001 Genomic DNA Translation: SUU47469.1
SNVS01000077 Genomic DNA Translation: TEX18712.1
SNVP01000129 Genomic DNA Translation: TEX27189.1
SSBA01000039 Genomic DNA Translation: TGZ00250.1
SRZJ01000049 Genomic DNA Translation: TGZ05720.1
RFBA02000001 Genomic DNA Translation: THJ62600.1
VAGE01000032 Genomic DNA Translation: TLT60757.1
VAFZ01000071 Genomic DNA Translation: TLT61527.1
VHEA01000016 Genomic DNA Translation: TPS03610.1
VHEY01000008 Genomic DNA Translation: TPS88197.1
VHGY01000072 Genomic DNA Translation: TPU60346.1
VHGX01000031 Genomic DNA Translation: TPU79280.1

NCBI Reference Sequences

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RefSeqi
WP_000653195.1, NZ_WQMN01000028.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AIL77820; AIL77820; IX87_03965
AKA32302; AKA32302; ABUW_2578
AKQ27378; AKQ27378; ACX60_11670
AMN01077; AMN01077; AZE33_07750
BAP67180; BAP67180; IOMTU433_2402
KHO14203; KHO14203; NT90_17085
KMV13382; KMV13382; AB988_2799
KQD92061; KQD92061; APD31_09720
KTK89073; KTK89073; AL489_17280
KUI78049; KUI78049; AQ480_00615
KZA24548; KZA24548; LV38_02303
OBE60659; OBE60659; A7934_06655
ODP68813; ODP68813; BGC29_07460

Database of genes from NCBI RefSeq genomes

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GeneIDi
31347859

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
abau:IX87_03965
abk:LX00_06415
abw:BL01_13265

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|470.1288.peg.2603

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KC432605 Genomic DNA Translation: AGM48620.1
CP008706 Genomic DNA Translation: AKA32302.1
KR109191 Genomic DNA Translation: AKR15107.1
KT334324 Genomic DNA Translation: ALD10108.1
CP027178 Genomic DNA Translation: AVI32547.1
NXGW01000057 Genomic DNA Translation: KAA0673300.1
VYJD01000001 Genomic DNA Translation: KAA8930250.1
VYJB01000001 Genomic DNA Translation: KAA8936308.1
JSAO01000080 Genomic DNA Translation: KHO14203.1
LRDW01000020 Genomic DNA Translation: KZA24548.1
LZVZ01000064 Genomic DNA Translation: OBN24745.1
LDDY01000007 Genomic DNA Translation: OBR18712.1
MDWM01000140 Genomic DNA Translation: ODP68813.1
LYKI01000034 Genomic DNA Translation: OIG70666.1
NKKF01000048 Genomic DNA Translation: PAM49921.1
CP039930 Genomic DNA Translation: QCO79206.1
CP045541 Genomic DNA Translation: QFV03592.1
QPHZ01000026 Genomic DNA Translation: RCU27867.1
RFDJ01000002 Genomic DNA Translation: RSR11971.1
RFDI01000065 Genomic DNA Translation: RSR63012.1
RXYO01000026 Genomic DNA Translation: RTY12199.1
SEUD01000008 Genomic DNA Translation: RYL15839.1
SEUE01000007 Genomic DNA Translation: RYL29040.1
SEUG01000005 Genomic DNA Translation: RYL43780.1
UFMQ01000004 Genomic DNA Translation: SST21267.1
UFRX01000001 Genomic DNA Translation: SUU47469.1
SNVS01000077 Genomic DNA Translation: TEX18712.1
SNVP01000129 Genomic DNA Translation: TEX27189.1
SSBA01000039 Genomic DNA Translation: TGZ00250.1
SRZJ01000049 Genomic DNA Translation: TGZ05720.1
RFBA02000001 Genomic DNA Translation: THJ62600.1
VAGE01000032 Genomic DNA Translation: TLT60757.1
VAFZ01000071 Genomic DNA Translation: TLT61527.1
VHEA01000016 Genomic DNA Translation: TPS03610.1
VHEY01000008 Genomic DNA Translation: TPS88197.1
VHGY01000072 Genomic DNA Translation: TPU60346.1
VHGX01000031 Genomic DNA Translation: TPU79280.1
RefSeqiWP_000653195.1, NZ_WQMN01000028.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi470.IX87_03965

Protein family/group databases

TCDBi3.A.23.4.1 the type vi symbiosis/virulence secretory system (t6ss) family

Genome annotation databases

EnsemblBacteriaiAIL77820; AIL77820; IX87_03965
AKA32302; AKA32302; ABUW_2578
AKQ27378; AKQ27378; ACX60_11670
AMN01077; AMN01077; AZE33_07750
BAP67180; BAP67180; IOMTU433_2402
KHO14203; KHO14203; NT90_17085
KMV13382; KMV13382; AB988_2799
KQD92061; KQD92061; APD31_09720
KTK89073; KTK89073; AL489_17280
KUI78049; KUI78049; AQ480_00615
KZA24548; KZA24548; LV38_02303
OBE60659; OBE60659; A7934_06655
ODP68813; ODP68813; BGC29_07460
GeneIDi31347859
KEGGiabau:IX87_03965
abk:LX00_06415
abw:BL01_13265
PATRICifig|470.1288.peg.2603

Phylogenomic databases

eggNOGiENOG4108RAE Bacteria
COG3157 LUCA
KOiK11903
OrthoDBi1153621at2

Family and domain databases

Gene3Di2.30.110.20, 1 hit
InterProiView protein in InterPro
IPR036624 Hcp1-lik_sf
IPR008514 T6SS_Hcp
PfamiView protein in Pfam
PF05638 T6SS_HCP, 1 hit
SUPFAMiSSF141452 SSF141452, 1 hit
TIGRFAMsiTIGR03344 VI_effect_Hcp1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiR9RIP4_ACIBA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: R9RIP4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 18, 2013
Last sequence update: September 18, 2013
Last modified: June 17, 2020
This is version 71 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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