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Entry version 71 (07 Oct 2020)
Sequence version 1 (18 Sep 2013)
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Protein
Submitted name:

TssB

Gene

tssB

Organism
Acinetobacter baumannii
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Protein family/group databases

Transport Classification Database

More...
TCDBi
3.A.23.4.1, the type vi symbiosis/virulence secretory system (t6ss) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
TssBImported
Submitted name:
TssB type VI secretion system proteinImported
Submitted name:
Type VI secretion proteinImported
Submitted name:
Type VI secretion protein, familyImported
Submitted name:
Type VI secretion system contractile sheath small subunitImported
Submitted name:
Type VI secretion system tubule-forming protein VipAImported
Submitted name:
Type VI secretion system-associated proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:tssBImported
Synonyms:hsiB1Imported
ORF Names:A7M90_06270Imported, A9843_10365Imported, AA954_07995Imported, AB552B1_01850Imported, AB901B6_00796Imported, AB945B12_02880Imported, ABKPCSM17A_02989Imported, ABUW_2580Imported, B9W69_16225Imported, BGC29_07450Imported, CEJ64_11825Imported, CSB70_1137Imported, DLI67_11115Imported, DLI69_10280Imported, DLI75_18330Imported, DVA69_02605Imported, E2533_04655Imported, E2535_03740Imported, E2540_13765Imported, EA667_012065Imported, EA685_02550Imported, EA686_02225Imported, EKS29_04995Imported, EWO92_13630Imported, EWO96_13100Imported, EWP49_12575Imported, F4T91_19430Imported, F4U04_18835Imported, F8B16_11805Imported, FD887_17810Imported, FD913_18665Imported, FJU36_12330Imported, FJU42_19310Imported, FJU79_03005Imported, FJV14_06505Imported, G3N45_06765Imported, GNY86_07570Imported, GSE42_07540Imported, GUK62_18005Imported, LV38_02305Imported, NCTC13420_01569Imported, SAMEA104305318_01420Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiAcinetobacter baumanniiImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri470 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesMoraxellaceaeAcinetobacterAcinetobacter calcoaceticus/baumannii complex
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
R9RIN9

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili123 – 163Sequence analysisAdd BLAST41

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

KEGG Orthology (KO)

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KOi
K11901

Database of Orthologous Groups

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OrthoDBi
1278805at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008312, T6SS_TssB1

The PANTHER Classification System

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PANTHERi
PTHR35850, PTHR35850, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05591, T6SS_VipA, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF028301, UCP028301, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR03358, VI_chp_5, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

R9RIN9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAKRESVQKK LQRIRPPRVQ LTYDVEIGDA KEAKELPFVV GVMGDFSAAS
60 70 80 90 100
ELERTKLKDK KFINVDLDNI DEVMESLSPR AAFQVDNTLT EEGGKMAVDL
110 120 130 140 150
TFKSMEDFRP ENVVQQVDPL KKLVEARERL TDLRNKISNS ERLEDLLDEV
160
LKNTDQIRKL SAEADHE
Length:167
Mass (Da):19,117
Last modified:September 18, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7026F37BB32E2EA7
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
KC432605 Genomic DNA Translation: AGM48618.1
CP008706 Genomic DNA Translation: AKA32304.1
KR109191 Genomic DNA Translation: AKR15105.1
KT334324 Genomic DNA Translation: ALD10110.1
CP027178 Genomic DNA Translation: AVI34288.1
CACSHE010000012 Genomic DNA Translation: CAA0176524.1
CACSGJ010000011 Genomic DNA Translation: CAA0216261.1
CACSGI010000035 Genomic DNA Translation: CAA0257671.1
CACSGV010000046 Genomic DNA Translation: CAA0259279.1
VYJD01000001 Genomic DNA Translation: KAA8930248.1
VYJB01000001 Genomic DNA Translation: KAA8936310.1
WBIZ01000012 Genomic DNA Translation: KAB1600334.1
LRDW01000020 Genomic DNA Translation: KZA24550.1
VYSO01000051 Genomic DNA Translation: MQZ21102.1
VYTB01000048 Genomic DNA Translation: MQZ43920.1
WPIP01000041 Genomic DNA Translation: MVM91372.1
WWCH01000001 Genomic DNA Translation: MYM77776.1
WYAB01000042 Genomic DNA Translation: MZY48206.1
JAAGTQ010000007 Genomic DNA Translation: NDW61875.1
LZVZ01000064 Genomic DNA Translation: OBN24747.1
LDDY01000007 Genomic DNA Translation: OBR18710.1
MDWM01000140 Genomic DNA Translation: ODP68811.1
LYKI01000034 Genomic DNA Translation: OIG70668.1
NKKF01000048 Genomic DNA Translation: PAM49919.1
NEQA01000041 Genomic DNA Translation: PRO33294.1
CP039930 Genomic DNA Translation: QCO79208.1
CP045541 Genomic DNA Translation: QFV03590.1
QPHP01000003 Genomic DNA Translation: RCU33732.1
RFDJ01000002 Genomic DNA Translation: RSR11969.1
RFDI01000065 Genomic DNA Translation: RSR63010.1
RXYO01000026 Genomic DNA Translation: RTY12197.1
SEUD01000008 Genomic DNA Translation: RYL15837.1
SEUE01000007 Genomic DNA Translation: RYL29038.1
SEUG01000005 Genomic DNA Translation: RYL43778.1
UFMQ01000004 Genomic DNA Translation: SST21269.1
UFRX01000001 Genomic DNA Translation: SUU47475.1
SNVL01000158 Genomic DNA Translation: TEW86180.1
SNVS01000077 Genomic DNA Translation: TEX18710.1
SNVQ01000069 Genomic DNA Translation: TEX25356.1
VAGE01000032 Genomic DNA Translation: TLT60759.1
VAFZ01000071 Genomic DNA Translation: TLT61529.1
VHEA01000016 Genomic DNA Translation: TPS03612.1
VHEY01000008 Genomic DNA Translation: TPS88195.1
VHGY01000072 Genomic DNA Translation: TPU60348.1
VHGX01000031 Genomic DNA Translation: TPU79278.1

NCBI Reference Sequences

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RefSeqi
WP_001119042.1, NZ_WYAT01000011.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AKA32304; AKA32304; ABUW_2580
AKQ27380; AKQ27380; ACX60_11680
AMN01075; AMN01075; AZE33_07740
BAP67182; BAP67182; IOMTU433_2404
KQD92063; KQD92063; APD31_09730
KTK89075; KTK89075; AL489_17290
KUI78051; KUI78051; AQ480_00625
KZA24550; KZA24550; LV38_02305
OBE60661; OBE60661; A7934_06665
ODP68811; ODP68811; BGC29_07450

Database of genes from NCBI RefSeq genomes

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GeneIDi
48994313

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
abw:BL01_13275

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|470.1288.peg.2605

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KC432605 Genomic DNA Translation: AGM48618.1
CP008706 Genomic DNA Translation: AKA32304.1
KR109191 Genomic DNA Translation: AKR15105.1
KT334324 Genomic DNA Translation: ALD10110.1
CP027178 Genomic DNA Translation: AVI34288.1
CACSHE010000012 Genomic DNA Translation: CAA0176524.1
CACSGJ010000011 Genomic DNA Translation: CAA0216261.1
CACSGI010000035 Genomic DNA Translation: CAA0257671.1
CACSGV010000046 Genomic DNA Translation: CAA0259279.1
VYJD01000001 Genomic DNA Translation: KAA8930248.1
VYJB01000001 Genomic DNA Translation: KAA8936310.1
WBIZ01000012 Genomic DNA Translation: KAB1600334.1
LRDW01000020 Genomic DNA Translation: KZA24550.1
VYSO01000051 Genomic DNA Translation: MQZ21102.1
VYTB01000048 Genomic DNA Translation: MQZ43920.1
WPIP01000041 Genomic DNA Translation: MVM91372.1
WWCH01000001 Genomic DNA Translation: MYM77776.1
WYAB01000042 Genomic DNA Translation: MZY48206.1
JAAGTQ010000007 Genomic DNA Translation: NDW61875.1
LZVZ01000064 Genomic DNA Translation: OBN24747.1
LDDY01000007 Genomic DNA Translation: OBR18710.1
MDWM01000140 Genomic DNA Translation: ODP68811.1
LYKI01000034 Genomic DNA Translation: OIG70668.1
NKKF01000048 Genomic DNA Translation: PAM49919.1
NEQA01000041 Genomic DNA Translation: PRO33294.1
CP039930 Genomic DNA Translation: QCO79208.1
CP045541 Genomic DNA Translation: QFV03590.1
QPHP01000003 Genomic DNA Translation: RCU33732.1
RFDJ01000002 Genomic DNA Translation: RSR11969.1
RFDI01000065 Genomic DNA Translation: RSR63010.1
RXYO01000026 Genomic DNA Translation: RTY12197.1
SEUD01000008 Genomic DNA Translation: RYL15837.1
SEUE01000007 Genomic DNA Translation: RYL29038.1
SEUG01000005 Genomic DNA Translation: RYL43778.1
UFMQ01000004 Genomic DNA Translation: SST21269.1
UFRX01000001 Genomic DNA Translation: SUU47475.1
SNVL01000158 Genomic DNA Translation: TEW86180.1
SNVS01000077 Genomic DNA Translation: TEX18710.1
SNVQ01000069 Genomic DNA Translation: TEX25356.1
VAGE01000032 Genomic DNA Translation: TLT60759.1
VAFZ01000071 Genomic DNA Translation: TLT61529.1
VHEA01000016 Genomic DNA Translation: TPS03612.1
VHEY01000008 Genomic DNA Translation: TPS88195.1
VHGY01000072 Genomic DNA Translation: TPU60348.1
VHGX01000031 Genomic DNA Translation: TPU79278.1
RefSeqiWP_001119042.1, NZ_WYAT01000011.1

3D structure databases

SMRiR9RIN9
ModBaseiSearch...

Protein family/group databases

TCDBi3.A.23.4.1, the type vi symbiosis/virulence secretory system (t6ss) family

Genome annotation databases

EnsemblBacteriaiAKA32304; AKA32304; ABUW_2580
AKQ27380; AKQ27380; ACX60_11680
AMN01075; AMN01075; AZE33_07740
BAP67182; BAP67182; IOMTU433_2404
KQD92063; KQD92063; APD31_09730
KTK89075; KTK89075; AL489_17290
KUI78051; KUI78051; AQ480_00625
KZA24550; KZA24550; LV38_02305
OBE60661; OBE60661; A7934_06665
ODP68811; ODP68811; BGC29_07450
GeneIDi48994313
KEGGiabw:BL01_13275
PATRICifig|470.1288.peg.2605

Phylogenomic databases

KOiK11901
OrthoDBi1278805at2

Family and domain databases

InterProiView protein in InterPro
IPR008312, T6SS_TssB1
PANTHERiPTHR35850, PTHR35850, 1 hit
PfamiView protein in Pfam
PF05591, T6SS_VipA, 1 hit
PIRSFiPIRSF028301, UCP028301, 1 hit
TIGRFAMsiTIGR03358, VI_chp_5, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiR9RIN9_ACIBA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: R9RIN9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 18, 2013
Last sequence update: September 18, 2013
Last modified: October 7, 2020
This is version 71 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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