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Entry version 29 (11 Dec 2019)
Sequence version 1 (26 Jun 2013)
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Protein
Submitted name:

Uncharacterized protein

Gene

CARUB_v10016562mg

Organism
Capsella rubella
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:CARUB_v10016562mgImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCapsella rubellaImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri81985 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeCapsella
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000029121 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

NucleusSAAS annotation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
81985.XP_006290487.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini866 – 917SANTInterPro annotationAdd BLAST52
Domaini1080 – 1131SANTInterPro annotationAdd BLAST52

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 68DisorderedSequence analysisAdd BLAST68
Regioni1056 – 1079DisorderedSequence analysisAdd BLAST24
Regioni1528 – 1548DisorderedSequence analysisAdd BLAST21
Regioni1630 – 1655DisorderedSequence analysisAdd BLAST26

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili525 – 552Sequence analysisAdd BLAST28

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1 – 28PolyampholyteSequence analysisAdd BLAST28
Compositional biasi30 – 44PolarSequence analysisAdd BLAST15

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

KEGG Orthology (KO)

More...
KOi
K04650

Database of Orthologous Groups

More...
OrthoDBi
87491at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00167 SANT, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR009057 Homeobox-like_sf
IPR001005 SANT/Myb
IPR017884 SANT_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00249 Myb_DNA-binding, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00717 SANT, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46689 SSF46689, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51293 SANT, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

R0HEB9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPQDHASWDR KELLRQRKHD RPEQSFDSPF RWRDSPTTPS SHHVPREFSR
60 70 80 90 100
WGGSGDFRRP SCHGKQGGRH QFVEEGSHGY TSSRSSARIF ENDYYRPSAS
110 120 130 140 150
RGDWRYTRNC RDDRASVSQK EWKCNTWDMS NGSSRSFERP FGIRNGRRSV
160 170 180 190 200
DERPLHASDT HTTMVNSLDP TNSAHQPDTE ICTPVRSLKF KNEQKFSDQR
210 220 230 240 250
LSLPSDPHSD CVRLFERPSS ENNYGNKICS PAKQCNDLMY GRRIANDNSL
260 270 280 290 300
DPPILNADLE GTWEQLHMKD PQEDNKLHGI TDLDDARKCA KESSLGAIGK
310 320 330 340 350
LPLWNSSGSF ASQSSGFSHS SSLKSVGAVD STDRKTEVLP KIATVAQSSS
360 370 380 390 400
GDATPCATTT HLFEEMSSRK KQRLGWGEGL AKYEKKKVDV NTNEDGTTLL
410 420 430 440 450
ENGLDEQHSL NKNIADKSPT AAILPDYGSP TTPSSVACSS SPGFADKSSA
460 470 480 490 500
KAAIAASDVS NMCRSPSPVS SIHLERFPVN IDELDNISME RFGCLLNELL
510 520 530 540 550
CTDEPGTGDS SSVQLTSMNR LLAWKSEILK AVEMTESEID LLENKHRTLK
560 570 580 590 600
LEGGRHCHVG SSSYFCEGDA DVPKEQEASC ILGPKAAATP VAEALVRSPV
610 620 630 640 650
HQSSLAKVSV DVCEDNTQEV KSLSQSFATV ESNEDILPKL SMKAVTSSKE
660 670 680 690 700
ISTPAFVNQE TVELSFADDS MASNEDLLCA KLLSSNKKYA CESSGVFNEL
710 720 730 740 750
LPRDCSFDES RYFGICQMQF DSHVKEKLAD RVELLRAREK ILLLQFKAFQ
760 770 780 790 800
LSWKKDLDQL ALTKYQSKSS RKSDLYPNAK NGGYLKLPQP VRLRFSSSAP
810 820 830 840 850
RRDSVVPTTE LVSYMEKLLL GTNLKPYRDI LRMPAMMLDE RERVMSRFIS
860 870 880 890 900
SNGLVEDPCD VEKERTMINP WTSEEKEIFL SMLAIHGKDF KKIASYLTEK
910 920 930 940 950
TTADCIDYYY KNHKSDCFGK IKKQRAYGKE GKHTYMLAPR KKWKREMGAA
960 970 980 990 1000
SLDILGAVSI IAANAGKVAS TRQISSKRIT LRGCSSSNSL QHDGNNSEGC
1010 1020 1030 1040 1050
SYSFDFPRKR TVGADVLAVG PLSSEQINSC LRTSVSSRER CMDHLKFNPV
1060 1070 1080 1090 1100
VKKPRISHTL HNENSNEEDD SCSEESCGET GPIHWTDDER SAFIQGFSLF
1110 1120 1130 1140 1150
GKNFASISRY VGTRSPDQCR VFFSKVRKCL GLEFIQSGSG NLSTSVSVDN
1160 1170 1180 1190 1200
GNEGGGSDLE DPCPMESNSG ICNNGVCAKM DINSPTSPFN MNQDGANHSG
1210 1220 1230 1240 1250
SANVKADLSR SEQENGLTYI HLKDGRNLVS NAYIKGDLPG LVSESCRDLV
1260 1270 1280 1290 1300
DINTVENQSQ AAGKSKSSDL LSMEIDEGVL TSVAVSSEPL YCGLSVLSNV
1310 1320 1330 1340 1350
IVETPTESSQ MGSGDQGAAT MLKLNSKNQD GVMQAANRTK NPGLDPESAP
1360 1370 1380 1390 1400
SGFKYPECLH HVPIEVCTEN PIGVSVPRGN PNCHTEAKSG NSLVGQAVET
1410 1420 1430 1440 1450
HGLGWQFSKE NLELNGRLQV IGHVNPEQNG QLNSINAESC QIPQRSVTQD
1460 1470 1480 1490 1500
PSRISRSKSD LIVKTQRTGE GFSLNKCTSS APNSLTVSHK EGRSGHIRSH
1510 1520 1530 1540 1550
SFSLSDTERL DKNGDVKLFG TVLTADENGI KQKHNPGGSV RSSSTLSRDH
1560 1570 1580 1590 1600
DTRHHYINQQ HLQNVPITSY GFWDGNRIQT GLTSLPESAK LLASCPEAFS
1610 1620 1630 1640 1650
THLKQQVGSN KEIRRDVNGG GILSFGKHNE DRAEASSAKD GGNIGGVNGV

AEAAT
Length:1,655
Mass (Da):181,932
Last modified:June 26, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4B92E8618E30301C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
KB870809 Genomic DNA Translation: EOA23385.1

NCBI Reference Sequences

More...
RefSeqi
XP_006290487.1, XM_006290425.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
17885771

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
crb:17885771

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KB870809 Genomic DNA Translation: EOA23385.1
RefSeqiXP_006290487.1, XM_006290425.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi81985.XP_006290487.1

Genome annotation databases

GeneIDi17885771
KEGGicrb:17885771

Phylogenomic databases

KOiK04650
OrthoDBi87491at2759

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001005 SANT/Myb
IPR017884 SANT_dom
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 2 hits
PROSITEiView protein in PROSITE
PS51293 SANT, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiR0HEB9_9BRAS
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: R0HEB9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 26, 2013
Last sequence update: June 26, 2013
Last modified: December 11, 2019
This is version 29 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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