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Entry version 31 (07 Oct 2020)
Sequence version 1 (26 Jun 2013)
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Protein
Submitted name:

Uncharacterized protein

Gene

CARUB_v10002954mg

Organism
Capsella rubella
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotationARBA annotation
Biological processmRNA processingARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:CARUB_v10002954mgImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCapsella rubellaImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri81985 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeCapsella
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000029121 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
81985.XP_006286729.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini179 – 260RRMInterPro annotationAdd BLAST82
Domaini328 – 371SURP motifInterPro annotationAdd BLAST44
Domaini436 – 581CIDInterPro annotationAdd BLAST146
Domaini630 – 664SAPInterPro annotationAdd BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 180DisorderedSequence analysisAdd BLAST180
Regioni410 – 435DisorderedSequence analysisAdd BLAST26
Regioni738 – 796DisorderedSequence analysisAdd BLAST59
Regioni836 – 949DisorderedSequence analysisAdd BLAST114

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili441 – 461Sequence analysisAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi11 – 35PolyampholyteSequence analysisAdd BLAST25
Compositional biasi41 – 55PolarSequence analysisAdd BLAST15
Compositional biasi64 – 79PolyampholyteSequence analysisAdd BLAST16
Compositional biasi98 – 168PolyampholyteSequence analysisAdd BLAST71
Compositional biasi738 – 757PolyampholyteSequence analysisAdd BLAST20
Compositional biasi768 – 796PolyampholyteSequence analysisAdd BLAST29
Compositional biasi850 – 949PolyampholyteSequence analysisAdd BLAST100

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0151, Eukaryota

KEGG Orthology (KO)

More...
KOi
K12842

Database of Orthologous Groups

More...
OrthoDBi
523911at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd12223, RRM_SR140, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.10.790, 1 hit
1.25.40.90, 1 hit
3.30.70.330, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006569, CID_dom
IPR008942, ENTH_VHS
IPR013170, mRNA_splic_Cwf21_dom
IPR012677, Nucleotide-bd_a/b_plait_sf
IPR035979, RBD_domain_sf
IPR000504, RRM_dom
IPR003034, SAP_dom
IPR035009, SR140_RRM
IPR000061, Surp
IPR035967, SWAP/Surp_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04818, CID, 1 hit
PF08312, cwf21, 1 hit
PF00076, RRM_1, 1 hit
PF01805, Surp, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01115, cwf21, 1 hit
SM00582, RPR, 1 hit
SM00360, RRM, 1 hit
SM00648, SWAP, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF109905, SSF109905, 1 hit
SSF48464, SSF48464, 1 hit
SSF54928, SSF54928, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51391, CID, 1 hit
PS50102, RRM, 1 hit
PS50800, SAP, 1 hit
PS50128, SURP, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

R0FC33-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSSFSINRKK TPFQKHREEE EARKKKAEDE TARLYQEFVE SFQGDSATTK
60 70 80 90 100
TFVRGGTINP GDKPKVDSEG EKSKDGGSIS KKGSRYVPSF LPPPLASKGK
110 120 130 140 150
EPEKKREEER PKEREKGKTR NIDHFMEELK REQEMRERRN QDRDRQGDNS
160 170 180 190 200
PSSRFDELPD DFDPSGRPGS FDDGDPQTTN LYVGNLSPKV DENFLLRTFG
210 220 230 240 250
RFGPIASVKI MWPRTDEEKR RQRNCGFVSF MNRADGQAAK DEMQGIIVYE
260 270 280 290 300
YELKIGWGKA VSLPSQALPA PPPGHMAIRS KEGCNLVFSG QTGPPITSVP
310 320 330 340 350
NQNSELVLTP NVPDITVVTP EDEHLRHVID TMALYVLDGE CAFEQAIMER
360 370 380 390 400
GRGNPMFKFL FELGSKEHTY YVWRLYSFAQ GDTLQRWRTE PYIMITGSGR
410 420 430 440 450
WIPPPLPVTR TQEHEKESAS TYAAGRSRRA EAERTLTDPQ RDEFEKVLRA
460 470 480 490 500
LTLERSQIKE AMGFALDNAD AAGEVVEFLT ESLTLKETPI PNKVARLMLV
510 520 530 540 550
SDILHNSSAR VKNASAYRTK FEATLPDIME SFNDLYRSIT GRITAEALKE
560 570 580 590 600
RVLKVLQVWA DWFLFSDAYI YGLRSTFLRS GVSGVTSFHS ICGDSPDIEN
610 620 630 640 650
KSYVDNMSSI GKINPDAALA IGKGAARQEL MNLPIAELER RCRHNGLSLV
660 670 680 690 700
GGRVMMVTRL LSLEDTDKQR GYEAVDVISK HPQDHSTWEE DKTEKEHINN
710 720 730 740 750
SYAQVEMKEP VNLATTIPIP QPELKAFMGK EKNELILPAS KWARDDDEAD
760 770 780 790 800
DEQKRSSSSG SDNAGGITFK ADDEDLKGND CVRVQPDNGM DEEQRQKRRR
810 820 830 840 850
IEVALIEYRE TLEEQGMKNS EEIERKVEIN RKRLEVDYGL LGSNEGNRNQ
860 870 880 890 900
KSIIERKERR EDSRESSKKR QRGENKSHSP PRKSLTRERE RDHDLDRDRD
910 920 930 940
RDRERHRDRD RQQDLNRDRD RREKSSSHDR DDHDRSKERD RDWRRRGTR
Length:949
Mass (Da):108,938
Last modified:June 26, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC277EBA56F0F042E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
KB870810 Genomic DNA Translation: EOA19627.1

NCBI Reference Sequences

More...
RefSeqi
XP_006286729.1, XM_006286667.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
17884538

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
crb:17884538

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KB870810 Genomic DNA Translation: EOA19627.1
RefSeqiXP_006286729.1, XM_006286667.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi81985.XP_006286729.1

Genome annotation databases

GeneIDi17884538
KEGGicrb:17884538

Phylogenomic databases

eggNOGiKOG0151, Eukaryota
KOiK12842
OrthoDBi523911at2759

Family and domain databases

CDDicd12223, RRM_SR140, 1 hit
Gene3Di1.10.10.790, 1 hit
1.25.40.90, 1 hit
3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR006569, CID_dom
IPR008942, ENTH_VHS
IPR013170, mRNA_splic_Cwf21_dom
IPR012677, Nucleotide-bd_a/b_plait_sf
IPR035979, RBD_domain_sf
IPR000504, RRM_dom
IPR003034, SAP_dom
IPR035009, SR140_RRM
IPR000061, Surp
IPR035967, SWAP/Surp_sf
PfamiView protein in Pfam
PF04818, CID, 1 hit
PF08312, cwf21, 1 hit
PF00076, RRM_1, 1 hit
PF01805, Surp, 1 hit
SMARTiView protein in SMART
SM01115, cwf21, 1 hit
SM00582, RPR, 1 hit
SM00360, RRM, 1 hit
SM00648, SWAP, 1 hit
SUPFAMiSSF109905, SSF109905, 1 hit
SSF48464, SSF48464, 1 hit
SSF54928, SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS51391, CID, 1 hit
PS50102, RRM, 1 hit
PS50800, SAP, 1 hit
PS50128, SURP, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiR0FC33_9BRAS
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: R0FC33
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 26, 2013
Last sequence update: June 26, 2013
Last modified: October 7, 2020
This is version 31 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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