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Protein
Submitted name:

Uncharacterized protein

Gene

CARUB_v10004873mg

Organism
Capsella rubella
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:CARUB_v10004873mgImported
OrganismiCapsella rubellaImported
Taxonomic identifieri81985 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeCapsella
Proteomesi
  • UP000029121 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini79 – 135HTH myb-typeInterPro annotationAdd BLAST57
Domaini136 – 186HTH myb-typeInterPro annotationAdd BLAST51

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR015495 Myb-like_TF
IPR017930 Myb_dom
IPR001005 SANT/Myb
PANTHERiPTHR10641 PTHR10641, 1 hit
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits

Sequencei

Sequence statusi: Complete.

R0F5E6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRNRGRHRTI LTSHLVRSLY ILCTSPYGPY DLFVSLFSLY SYPLTSLKLS
60 70 80 90 100
HLLLNQLTIL FPYKQSSSIS MARSPCCEKN GLKKGPWTSE EDQKLVDYIQ
110 120 130 140 150
KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY LRPDIKRGRF SFEEEETIIQ
160 170 180 190 200
LHSFLGNKWS AIAARLPGRT DNEIKNFWNT HIRKKLLRMG IDPVTHSPRL
210 220 230 240 250
DLLDISSILA SSLYNSSSSH HMNMSGLMMD THRRHQHQNP LVNPEILKLA
260 270 280 290 300
TSLFSQNQNH NQNLVVDHDS RTQGKQPVYH QHDVNQAGVN QYQTDQYFEN
310 320 330 340 350
TITQELQSSM PPFPNEAHQF DHMDHHFNGF GEQTLASTST TSVQDCNNLS
360 370 380 390 400
TFNDYSSSNY VLDPDQSFNF ANSVLNTPSS SPSPTTLNSS YINSSSCSTE
410 420
DEIESYCSNL MKFDIPDFLD VNGFII
Length:426
Mass (Da):48,760
Last modified:June 26, 2013 - v1
Checksum:i29AD686384D58EDE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KB870811 Genomic DNA Translation: EOA16681.1
RefSeqiXP_006283783.1, XM_006283721.1

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KB870811 Genomic DNA Translation: EOA16681.1
RefSeqiXP_006283783.1, XM_006283721.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR015495 Myb-like_TF
IPR017930 Myb_dom
IPR001005 SANT/Myb
PANTHERiPTHR10641 PTHR10641, 1 hit
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiR0F5E6_9BRAS
AccessioniPrimary (citable) accession number: R0F5E6
Entry historyiIntegrated into UniProtKB/TrEMBL: June 26, 2013
Last sequence update: June 26, 2013
Last modified: November 7, 2018
This is version 22 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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