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UniProtKB - Q9ZVT0 (Q9ZVT0_ARATH)

Entry version 124 (25 May 2022)
Sequence version 1 (01 May 1999)
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Protein
Submitted name:

ELKS/Rab6-interacting/CAST family protein

Gene

At1g03290

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
ELKS/Rab6-interacting/CAST family proteinImported
Submitted name:
F15K9.11 proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At1g03290Imported
ORF Names:F15K9.11Imported, F15K9_11Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

The Arabidopsis Information Resource

More...TAIRi		locus:2014540, AT1G03290

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		183250

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		3702.AT1G03290.2

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili285 – 329Sequence analysisAdd BLAST45
Coiled coili341 – 361Sequence analysisAdd BLAST21
Coiled coili366 – 393Sequence analysisAdd BLAST28
Coiled coili398 – 450Sequence analysisAdd BLAST53

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502QVXV, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_017675_1_0_1

Database of Orthologous Groups

More...OrthoDBi		419337at2759

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

Q9ZVT0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGFGSVYRSL TEIFPQIDAR ILRAVAIEHP KDADEAAAVV LSEIIPSFSS 
        60         70         80         90        100
NLFHNFTQSS YKSSGSISER EVEHGLEDVA SRCRPFLGAS GSKASTSSSS 
       110        120        130        140        150
SSSETLPLVV TRDHNTRALS TDLVSNMNEL TTLQPNVDPD VCHKDLESEE 
       160        170        180        190        200
IQSVKKARGK ENGNYDLFGR CFDVTSNAKI GLDVPEDDIA SVVSLFSLDN 
       210        220        230        240        250
VKLASNFWED LGFDITWNQA ENAVSKLVDS TPGDTMTTTQ QGSCFEVGHG 
       260        270        280        290        300
STNLVDETSN RSLFSENGDT EIGDAFSTST HVCSVDQLED IIEDAKSNKK 
       310        320        330        340        350
NLLTEMETVT NIMREVELKE KDAEKSKEEA ARGGLDTLQK VEELKKMLEH 
       360        370        380        390        400
AKEANDMHAG EVYGEKSILA TEVKELENRL LNLSEERNKS LAILDEMRGS 
       410        420        430        440        450
LEIRLAAALE LKKTAEKEKK DKEDSALKAL AEQEANMEKV VQESKLLQQE 
       460        470        480        490        500
AEENSKLRDF LMDRGQIVDT LQGEISVICQ DVKLLKEKFE NRVPLTKSIS 
       510        520        530        540        550
SSFTSSCGSS MKSLVLENPS ERLNGVTETS NNNKFPEAAA FFMNKEKDDC 
       560        570 
RDLLEDGWDI FDKETEQVVW Y
Length:571
Mass (Da):63,327
Last modified:May 1, 1999 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0563305D22E842F2
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8AT82A0A1P8AT82_ARATH
ELKS/Rab6-interacting/CAST family p...
At1g03290, F15K9.11, F15K9_11
519Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8AT68A0A1P8AT68_ARATH
ELKS/Rab6-interacting/CAST family p...
At1g03290, F15K9.11, F15K9_11
541Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AC005278 Genomic DNA Translation: AAC72125.1
CP002684 Genomic DNA Translation: AEE27554.1
CP002684 Genomic DNA Translation: AEE27555.1
CP002684 Genomic DNA Translation: ANM59851.1
CP002684 Genomic DNA Translation: ANM59852.1

Protein sequence database of the Protein Information Resource

More...PIRi		D86164

NCBI Reference Sequences

More...RefSeqi		NP_001184898.1, NM_001197969.2
NP_001322179.1, NM_001331401.1
NP_001322180.1, NM_001331402.1
NP_171828.1, NM_100211.4

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		AT1G03290.1; AT1G03290.1; AT1G03290
AT1G03290.2; AT1G03290.2; AT1G03290
AT1G03290.3; AT1G03290.3; AT1G03290
AT1G03290.4; AT1G03290.4; AT1G03290

Database of genes from NCBI RefSeq genomes

More...GeneIDi		838603

Gramene; a comparative resource for plants

More...Gramenei		AT1G03290.1; AT1G03290.1; AT1G03290
AT1G03290.2; AT1G03290.2; AT1G03290
AT1G03290.3; AT1G03290.3; AT1G03290
AT1G03290.4; AT1G03290.4; AT1G03290

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ath:AT1G03290

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005278 Genomic DNA Translation: AAC72125.1
CP002684 Genomic DNA Translation: AEE27554.1
CP002684 Genomic DNA Translation: AEE27555.1
CP002684 Genomic DNA Translation: ANM59851.1
CP002684 Genomic DNA Translation: ANM59852.1
PIRiD86164
RefSeqiNP_001184898.1, NM_001197969.2
NP_001322179.1, NM_001331401.1
NP_001322180.1, NM_001331402.1
NP_171828.1, NM_100211.4

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi3702.AT1G03290.2

Proteomic databases

ProteomicsDBi183250

Genome annotation databases

EnsemblPlantsiAT1G03290.1; AT1G03290.1; AT1G03290
AT1G03290.2; AT1G03290.2; AT1G03290
AT1G03290.3; AT1G03290.3; AT1G03290
AT1G03290.4; AT1G03290.4; AT1G03290
GeneIDi838603
GrameneiAT1G03290.1; AT1G03290.1; AT1G03290
AT1G03290.2; AT1G03290.2; AT1G03290
AT1G03290.3; AT1G03290.3; AT1G03290
AT1G03290.4; AT1G03290.4; AT1G03290
KEGGiath:AT1G03290

Organism-specific databases

TAIRilocus:2014540, AT1G03290

Phylogenomic databases

eggNOGiENOG502QVXV, Eukaryota
HOGENOMiCLU_017675_1_0_1
OrthoDBi419337at2759

Family and domain databases

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9ZVT0_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9ZVT0
Secondary accession number(s): A0A178WKZ9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 1999
Last sequence update: May 1, 1999
Last modified: May 25, 2022
This is version 124 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Proteomics identificationCombined sources, Reference proteomeImported
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