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Entry version 135 (18 Sep 2019)
Sequence version 1 (01 May 1999)
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Protein

EP1-like glycoprotein 3

Gene

At1g78850

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

May be involved in a cell-to cell programmed cell death (PCD) signaling mechanism.1 Publication

Caution

Identified as a cargo protein of vacuolar sorting receptors (PubMed:23738689). This was based on interactions with truncated vacuolar sorting receptors and their co-secretion in the culture medium (PubMed:23738689). This function is however not supported by recent evidences.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandLectin

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
EP1-like glycoprotein 31 Publication
Alternative name(s):
Curculin-like (Mannose-binding) lectin family protein1 Publication
Putative receptor-like protein kinase-like protein1 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At1g78850Imported
ORF Names:F9K20.10Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G78850

The Arabidopsis Information Resource

More...
TAIRi
locus:2037508 AT1G78850

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell wall, Secreted

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 22Sequence analysisAdd BLAST22
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500997482723 – 441EP1-like glycoprotein 3Sequence analysisAdd BLAST419

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi102N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi258N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi269N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi387 ↔ 409PROSITE-ProRule annotation
Disulfide bondi391 ↔ 397PROSITE-ProRule annotation

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Phosphorylated on tyrosine.1 Publication

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9ZVA4

PRoteomics IDEntifications database

More...
PRIDEi
Q9ZVA4

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q9ZVA4

SwissPalm database of S-palmitoylation events

More...
SwissPalmi
Q9ZVA4

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

Up-regulated by fungal elicitor (PubMed:12833529). Up-regulated in both heat- and senescence-induced programmed cell death (PCD) (PubMed:15276441).2 Publications

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9ZVA4 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

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IntActi
Q9ZVA4, 1 interactor

STRING: functional protein association networks

More...
STRINGi
3702.AT1G78850.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9ZVA4

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini29 – 159Bulb-type lectinPROSITE-ProRule annotationAdd BLAST131
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati254 – 296WDSequence analysisAdd BLAST43
Domaini356 – 433PANPROSITE-ProRule annotationAdd BLAST78

Keywords - Domaini

Signal, WD repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IMUC Eukaryota
ENOG410YGSV LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000148331

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9ZVA4

Identification of Orthologs from Complete Genome Data

More...
OMAi
ESRCWIA

Database of Orthologous Groups

More...
OrthoDBi
556631at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9ZVA4

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00028 B_lectin, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.90.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001480 Bulb-type_lectin_dom
IPR036426 Bulb-type_lectin_dom_sf
IPR003609 Pan_app
IPR035446 SLSG/EP1

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01453 B_lectin, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF002686 SLG, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00108 B_lectin, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51110 SSF51110, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50927 BULB_LECTIN, 1 hit
PS50948 PAN, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9ZVA4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKFSITLALC FTLSIFLIGS QAKVPVDDQF RVVNEGGYTD YSPIEYNPDV
60 70 80 90 100
RGFVPFSDNF RLCFYNTTPN AYTLALRIGN RVQESTLRWV WEANRGSPVK
110 120 130 140 150
ENATLTFGED GNLVLAEADG RLVWQTNTAN KGAVGIKILE NGNMVIYDSS
160 170 180 190 200
GKFVWQSFDS PTDTLLVGQS LKLNGRTKLV SRLSPSVNTN GPYSLVMEAK
210 220 230 240 250
KLVLYYTTNK TPKPIAYFEY EFFTKITQFQ SMTFQAVEDS DTTWGLVMEG
260 270 280 290 300
VDSGSKFNVS TFLSRPKHNA TLSFIRLESD GNIRVWSYST LATSTAWDVT
310 320 330 340 350
YTAFTNADTD GNDECRIPEH CLGFGLCKKG QCNACPSDKG LLGWDETCKS
360 370 380 390 400
PSLASCDPKT FHYFKIEGAD SFMTKYNGGS STTESACGDK CTRDCKCLGF
410 420 430 440
FYNRKSSRCW LGYELKTLTR TGDSSLVAYV KAPNANKKST L
Length:441
Mass (Da):49,051
Last modified:May 1, 1999 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEAD06180A1C38150
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti432A → T in AAN31898 (PubMed:14593172).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC005679 Genomic DNA Translation: AAC83025.1
CP002684 Genomic DNA Translation: AEE36162.1
AY054501 mRNA Translation: AAK96692.1
BT000758 mRNA Translation: AAN31898.1

Protein sequence database of the Protein Information Resource

More...
PIRi
H96817

NCBI Reference Sequences

More...
RefSeqi
NP_178006.1, NM_106533.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G78850.1; AT1G78850.1; AT1G78850

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
844222

Gramene; a comparative resource for plants

More...
Gramenei
AT1G78850.1; AT1G78850.1; AT1G78850

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G78850

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005679 Genomic DNA Translation: AAC83025.1
CP002684 Genomic DNA Translation: AEE36162.1
AY054501 mRNA Translation: AAK96692.1
BT000758 mRNA Translation: AAN31898.1
PIRiH96817
RefSeqiNP_178006.1, NM_106533.3

3D structure databases

SMRiQ9ZVA4
ModBaseiSearch...

Protein-protein interaction databases

IntActiQ9ZVA4, 1 interactor
STRINGi3702.AT1G78850.1

PTM databases

iPTMnetiQ9ZVA4
SwissPalmiQ9ZVA4

Proteomic databases

PaxDbiQ9ZVA4
PRIDEiQ9ZVA4

Genome annotation databases

EnsemblPlantsiAT1G78850.1; AT1G78850.1; AT1G78850
GeneIDi844222
GrameneiAT1G78850.1; AT1G78850.1; AT1G78850
KEGGiath:AT1G78850

Organism-specific databases

AraportiAT1G78850
TAIRilocus:2037508 AT1G78850

Phylogenomic databases

eggNOGiENOG410IMUC Eukaryota
ENOG410YGSV LUCA
HOGENOMiHOG000148331
InParanoidiQ9ZVA4
OMAiESRCWIA
OrthoDBi556631at2759
PhylomeDBiQ9ZVA4

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9ZVA4

Gene expression databases

ExpressionAtlasiQ9ZVA4 baseline and differential

Family and domain databases

CDDicd00028 B_lectin, 1 hit
Gene3Di2.90.10.10, 1 hit
InterProiView protein in InterPro
IPR001480 Bulb-type_lectin_dom
IPR036426 Bulb-type_lectin_dom_sf
IPR003609 Pan_app
IPR035446 SLSG/EP1
PfamiView protein in Pfam
PF01453 B_lectin, 1 hit
PIRSFiPIRSF002686 SLG, 1 hit
SMARTiView protein in SMART
SM00108 B_lectin, 1 hit
SUPFAMiSSF51110 SSF51110, 1 hit
PROSITEiView protein in PROSITE
PS50927 BULB_LECTIN, 1 hit
PS50948 PAN, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiEP1L3_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9ZVA4
Secondary accession number(s): Q8H153
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 7, 2017
Last sequence update: May 1, 1999
Last modified: September 18, 2019
This is version 135 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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