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UniProtKB - Q9ZUM0 (C3H17_ARATH)
Protein
Zinc finger CCCH domain-containing protein 17
Gene
At2g02160
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Zinc fingeri | 34 – 58 | C3H1-type 1PROSITE-ProRule annotationAdd BLAST | 25 | |
Zinc fingeri | 60 – 86 | C3H1-type 2PROSITE-ProRule annotationAdd BLAST | 27 | |
Zinc fingeri | 114 – 141 | C3H1-type 3PROSITE-ProRule annotationAdd BLAST | 28 |
GO - Molecular functioni
- DNA binding Source: UniProtKB-KW
- metal ion binding Source: UniProtKB-KW
- mRNA binding Source: TAIR
GO - Biological processi
- poly(A)+ mRNA export from nucleus Source: GO_Central
- positive regulation of transcription, DNA-templated Source: TAIR
Keywordsi
Molecular function | DNA-binding |
Ligand | Metal-binding, Zinc |
Names & Taxonomyi
Protein namesi | Recommended name: Zinc finger CCCH domain-containing protein 17Short name: AtC3H17 |
Gene namesi | Ordered Locus Names:At2g02160 ORF Names:F5O4.7 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT2G02160 |
TAIRi | locus:2051683, AT2G02160 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000371976 | 1 – 669 | Zinc finger CCCH domain-containing protein 17Add BLAST | 669 |
Proteomic databases
PaxDbi | Q9ZUM0 |
PRIDEi | Q9ZUM0 |
ProteomicsDBi | 239085 |
PTM databases
iPTMneti | Q9ZUM0 |
Expressioni
Gene expression databases
ExpressionAtlasi | Q9ZUM0, baseline and differential |
Genevisiblei | Q9ZUM0, AT |
Interactioni
Binary interactionsi
Q9ZUM0
With | #Exp. | IntAct |
---|---|---|
IAA16 [O24407] | 3 | EBI-15206592,EBI-632231 |
IAA20 [O24410] | 3 | EBI-15206592,EBI-632272 |
TGA6 [Q39140] | 3 | EBI-15206592,EBI-541321 |
Protein-protein interaction databases
BioGRIDi | 150, 6 interactors |
IntActi | Q9ZUM0, 6 interactors |
STRINGi | 3702.AT2G02160.1 |
Structurei
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 23 | DisorderedSequence analysisAdd BLAST | 23 | |
Regioni | 150 – 175 | DisorderedSequence analysisAdd BLAST | 26 | |
Regioni | 285 – 306 | DisorderedSequence analysisAdd BLAST | 22 | |
Regioni | 376 – 589 | DisorderedSequence analysisAdd BLAST | 214 | |
Regioni | 642 – 669 | DisorderedSequence analysisAdd BLAST | 28 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 1 – 17 | Polar residuesSequence analysisAdd BLAST | 17 | |
Compositional biasi | 285 – 299 | Basic and acidic residuesSequence analysisAdd BLAST | 15 | |
Compositional biasi | 391 – 408 | Basic and acidic residuesSequence analysisAdd BLAST | 18 | |
Compositional biasi | 417 – 466 | Basic and acidic residuesSequence analysisAdd BLAST | 50 | |
Compositional biasi | 474 – 521 | Basic and acidic residuesSequence analysisAdd BLAST | 48 | |
Compositional biasi | 549 – 581 | Basic and acidic residuesSequence analysisAdd BLAST | 33 |
Zinc finger
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Zinc fingeri | 34 – 58 | C3H1-type 1PROSITE-ProRule annotationAdd BLAST | 25 | |
Zinc fingeri | 60 – 86 | C3H1-type 2PROSITE-ProRule annotationAdd BLAST | 27 | |
Zinc fingeri | 114 – 141 | C3H1-type 3PROSITE-ProRule annotationAdd BLAST | 28 |
Keywords - Domaini
Repeat, Zinc-fingerPhylogenomic databases
eggNOGi | KOG4791, Eukaryota |
HOGENOMi | CLU_025172_0_0_1 |
InParanoidi | Q9ZUM0 |
OMAi | ATHAPYN |
OrthoDBi | 985862at2759 |
PhylomeDBi | Q9ZUM0 |
Family and domain databases
InterProi | View protein in InterPro IPR041686, Znf-CCCH_3 IPR000571, Znf_CCCH IPR036855, Znf_CCCH_sf |
Pfami | View protein in Pfam PF15663, zf-CCCH_3, 1 hit |
SMARTi | View protein in SMART SM00356, ZnF_C3H1, 3 hits |
SUPFAMi | SSF90229, SSF90229, 1 hit |
PROSITEi | View protein in PROSITE PS50103, ZF_C3H1, 3 hits |
i Sequence
Sequence statusi: Complete.
Q9ZUM0-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MFAPATQPQQ QHEQKKQSET VSSAEEDALK WNTDCVYFLA SPLTCKKGPE
60 70 80 90 100
CEYRHSEYAR MNPRDCYYWL NGNCLNPKCG FRHPPLEGLL GNQGGAPAVS
110 120 130 140 150
VQPIHATAQH PSVAKQPVPC LFFQKGMCMK GDMCSFLHTP NPAAYKKQHP
160 170 180 190 200
VEAKPATDPQ CSKKPIENNT EEKKLPDVNL SKVVKGHTDI SAAPRVASTG
210 220 230 240 250
LRDSRSVEGY IPNHVGYEPV VQRKGPGFPS FTEGGHSTQL LQKYGSDDNN
260 270 280 290 300
SFHNGKDADD VLRESSPGFD VLVDNEAGDS EYYHVEDRYG RRSQERGNSE
310 320 330 340 350
YDPDFSAIAD GDKEALREQR FDSYDRREDR GWGHRRVSSE REDRLDRRVY
360 370 380 390 400
AEDERSENIL ESDLRYRLAK QRKGNGMRLS VGGHDYAAPD SSMDRGYRES
410 420 430 440 450
RRDTPRENSI SSSRLQGRIK LRERSNGEEG HHFDRRSERG RDRSELPSQG
460 470 480 490 500
RLRDRIKGRL EENHSGNQER GFGAPWARRR EMEDERKSAP KSSREESKPE
510 520 530 540 550
PSLGKRKSFE EDHHSHKRSR DSFAAPLPFS EILKRKKAAA SGGSRNNNKD
560 570 580 590 600
ETISKEEAGD EIKLITEEKT EVVSEPKAEV EEEGTVMEEE EIVGEEVYEG
610 620 630 640 650
NEDEQAYEGD ELNGEYYYEE GYEEEGGEYA YEEGEEVVYA AEEGEEEATE
660
GGEGEGEEDI EKKTVEMLS
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 30 | K → E in AAM20729 (PubMed:14593172).Curated | 1 | |
Sequence conflicti | 458 | G → S in AAL24118 (PubMed:14593172).Curated | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC005936 Genomic DNA Translation: AAC97218.1 CP002685 Genomic DNA Translation: AEC05554.1 AY059770 mRNA Translation: AAL24118.1 AY099878 mRNA Translation: AAM20729.1 BT000894 mRNA Translation: AAN41294.1 |
PIRi | F84433 |
RefSeqi | NP_027420.1, NM_126276.4 |
Genome annotation databases
EnsemblPlantsi | AT2G02160.1; AT2G02160.1; AT2G02160 |
GeneIDi | 814747 |
Gramenei | AT2G02160.1; AT2G02160.1; AT2G02160 |
KEGGi | ath:AT2G02160 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC005936 Genomic DNA Translation: AAC97218.1 CP002685 Genomic DNA Translation: AEC05554.1 AY059770 mRNA Translation: AAL24118.1 AY099878 mRNA Translation: AAM20729.1 BT000894 mRNA Translation: AAN41294.1 |
PIRi | F84433 |
RefSeqi | NP_027420.1, NM_126276.4 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
BioGRIDi | 150, 6 interactors |
IntActi | Q9ZUM0, 6 interactors |
STRINGi | 3702.AT2G02160.1 |
PTM databases
iPTMneti | Q9ZUM0 |
Proteomic databases
PaxDbi | Q9ZUM0 |
PRIDEi | Q9ZUM0 |
ProteomicsDBi | 239085 |
Genome annotation databases
EnsemblPlantsi | AT2G02160.1; AT2G02160.1; AT2G02160 |
GeneIDi | 814747 |
Gramenei | AT2G02160.1; AT2G02160.1; AT2G02160 |
KEGGi | ath:AT2G02160 |
Organism-specific databases
Araporti | AT2G02160 |
TAIRi | locus:2051683, AT2G02160 |
Phylogenomic databases
eggNOGi | KOG4791, Eukaryota |
HOGENOMi | CLU_025172_0_0_1 |
InParanoidi | Q9ZUM0 |
OMAi | ATHAPYN |
OrthoDBi | 985862at2759 |
PhylomeDBi | Q9ZUM0 |
Miscellaneous databases
PROi | PR:Q9ZUM0 |
Gene expression databases
ExpressionAtlasi | Q9ZUM0, baseline and differential |
Genevisiblei | Q9ZUM0, AT |
Family and domain databases
InterProi | View protein in InterPro IPR041686, Znf-CCCH_3 IPR000571, Znf_CCCH IPR036855, Znf_CCCH_sf |
Pfami | View protein in Pfam PF15663, zf-CCCH_3, 1 hit |
SMARTi | View protein in SMART SM00356, ZnF_C3H1, 3 hits |
SUPFAMi | SSF90229, SSF90229, 1 hit |
PROSITEi | View protein in PROSITE PS50103, ZF_C3H1, 3 hits |
MobiDBi | Search... |
Entry informationi
Entry namei | C3H17_ARATH | |
Accessioni | Q9ZUM0Primary (citable) accession number: Q9ZUM0 Secondary accession number(s): Q8L5Y1, Q93YT9 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | May 5, 2009 |
Last sequence update: | May 1, 1999 | |
Last modified: | September 29, 2021 | |
This is version 116 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names