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UniProtKB - Q9ZUM0 (C3H17_ARATH)

Entry version 105 (08 May 2019)
Sequence version 1 (01 May 1999)
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Protein

Zinc finger CCCH domain-containing protein 17

Gene

At2g02160

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri34 – 58C3H1-type 1PROSITE-ProRule annotationAdd BLAST25
Zinc fingeri60 – 86C3H1-type 2PROSITE-ProRule annotationAdd BLAST27
Zinc fingeri114 – 141C3H1-type 3PROSITE-ProRule annotationAdd BLAST28

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

  • poly(A)+ mRNA export from nucleus Source: GO_Central
Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Zinc finger CCCH domain-containing protein 17
Short name:
AtC3H17
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At2g02160
ORF Names:F5O4.7
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Arabidopsis Information Portal

More...Araporti		AT2G02160

The Arabidopsis Information Resource

More...TAIRi		locus:2051683 AT2G02160

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003719761 – 669Zinc finger CCCH domain-containing protein 17Add BLAST669

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q9ZUM0

PRoteomics IDEntifications database

More...PRIDEi		Q9ZUM0

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q9ZUM0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q9ZUM0 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q9ZUM0 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...BioGridi		150, 3 interactors

Protein interaction database and analysis system

More...IntActi		Q9ZUM0, 3 interactors

STRING: functional protein association networks

More...STRINGi		3702.AT2G02160.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi317 – 480Arg-richAdd BLAST164
Compositional biasi551 – 666Glu-richAdd BLAST116

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri34 – 58C3H1-type 1PROSITE-ProRule annotationAdd BLAST25
Zinc fingeri60 – 86C3H1-type 2PROSITE-ProRule annotationAdd BLAST27
Zinc fingeri114 – 141C3H1-type 3PROSITE-ProRule annotationAdd BLAST28

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG4791 Eukaryota
ENOG41101ZI LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000239634

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q9ZUM0

Identification of Orthologs from Complete Genome Data

More...OMAi		YARMNPR

Database of Orthologous Groups

More...OrthoDBi		985862at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q9ZUM0

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR041686 Znf-CCCH_3
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF15663 zf-CCCH_3, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00356 ZnF_C3H1, 3 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF90229 SSF90229, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50103 ZF_C3H1, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9ZUM0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFAPATQPQQ QHEQKKQSET VSSAEEDALK WNTDCVYFLA SPLTCKKGPE 
        60         70         80         90        100
CEYRHSEYAR MNPRDCYYWL NGNCLNPKCG FRHPPLEGLL GNQGGAPAVS 
       110        120        130        140        150
VQPIHATAQH PSVAKQPVPC LFFQKGMCMK GDMCSFLHTP NPAAYKKQHP 
       160        170        180        190        200
VEAKPATDPQ CSKKPIENNT EEKKLPDVNL SKVVKGHTDI SAAPRVASTG 
       210        220        230        240        250
LRDSRSVEGY IPNHVGYEPV VQRKGPGFPS FTEGGHSTQL LQKYGSDDNN 
       260        270        280        290        300
SFHNGKDADD VLRESSPGFD VLVDNEAGDS EYYHVEDRYG RRSQERGNSE 
       310        320        330        340        350
YDPDFSAIAD GDKEALREQR FDSYDRREDR GWGHRRVSSE REDRLDRRVY 
       360        370        380        390        400
AEDERSENIL ESDLRYRLAK QRKGNGMRLS VGGHDYAAPD SSMDRGYRES 
       410        420        430        440        450
RRDTPRENSI SSSRLQGRIK LRERSNGEEG HHFDRRSERG RDRSELPSQG 
       460        470        480        490        500
RLRDRIKGRL EENHSGNQER GFGAPWARRR EMEDERKSAP KSSREESKPE 
       510        520        530        540        550
PSLGKRKSFE EDHHSHKRSR DSFAAPLPFS EILKRKKAAA SGGSRNNNKD 
       560        570        580        590        600
ETISKEEAGD EIKLITEEKT EVVSEPKAEV EEEGTVMEEE EIVGEEVYEG 
       610        620        630        640        650
NEDEQAYEGD ELNGEYYYEE GYEEEGGEYA YEEGEEVVYA AEEGEEEATE 
       660 
GGEGEGEEDI EKKTVEMLS
Length:669
Mass (Da):75,832
Last modified:May 1, 1999 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i3E59A581CA57659B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti30K → E in AAM20729 (PubMed:14593172).Curated1
Sequence conflicti458G → S in AAL24118 (PubMed:14593172).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AC005936 Genomic DNA Translation: AAC97218.1
CP002685 Genomic DNA Translation: AEC05554.1
AY059770 mRNA Translation: AAL24118.1
AY099878 mRNA Translation: AAM20729.1
BT000894 mRNA Translation: AAN41294.1

Protein sequence database of the Protein Information Resource

More...PIRi		F84433

NCBI Reference Sequences

More...RefSeqi		NP_027420.1, NM_126276.4

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		AT2G02160.1; AT2G02160.1; AT2G02160

Database of genes from NCBI RefSeq genomes

More...GeneIDi		814747

Gramene; a comparative resource for plants

More...Gramenei		AT2G02160.1; AT2G02160.1; AT2G02160

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ath:AT2G02160

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005936 Genomic DNA Translation: AAC97218.1
CP002685 Genomic DNA Translation: AEC05554.1
AY059770 mRNA Translation: AAL24118.1
AY099878 mRNA Translation: AAM20729.1
BT000894 mRNA Translation: AAN41294.1
PIRiF84433
RefSeqiNP_027420.1, NM_126276.4

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

BioGridi150, 3 interactors
IntActiQ9ZUM0, 3 interactors
STRINGi3702.AT2G02160.1

PTM databases

iPTMnetiQ9ZUM0

Proteomic databases

PaxDbiQ9ZUM0
PRIDEiQ9ZUM0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G02160.1; AT2G02160.1; AT2G02160
GeneIDi814747
GrameneiAT2G02160.1; AT2G02160.1; AT2G02160
KEGGiath:AT2G02160

Organism-specific databases

AraportiAT2G02160
TAIRilocus:2051683 AT2G02160

Phylogenomic databases

eggNOGiKOG4791 Eukaryota
ENOG41101ZI LUCA
HOGENOMiHOG000239634
InParanoidiQ9ZUM0
OMAiYARMNPR
OrthoDBi985862at2759
PhylomeDBiQ9ZUM0

Miscellaneous databases

Protein Ontology

More...PROi		PR:Q9ZUM0

Gene expression databases

ExpressionAtlasiQ9ZUM0 baseline and differential
GenevisibleiQ9ZUM0 AT

Family and domain databases

InterProiView protein in InterPro
IPR041686 Znf-CCCH_3
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
PfamiView protein in Pfam
PF15663 zf-CCCH_3, 1 hit
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 3 hits
SUPFAMiSSF90229 SSF90229, 1 hit
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC3H17_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9ZUM0
Secondary accession number(s): Q8L5Y1, Q93YT9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: May 1, 1999
Last modified: May 8, 2019
This is version 105 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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