Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

HTH-type transcriptional activator SoxR homolog

Gene

soxR

Organism
Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi113Iron-sulfur (2Fe-2S)By similarity1
Metal bindingi116Iron-sulfur (2Fe-2S)By similarity1
Metal bindingi118Iron-sulfur (2Fe-2S)By similarity1
Metal bindingi124Iron-sulfur (2Fe-2S)By similarity1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi8 – 34H-T-H motifPROSITE-ProRule annotationAdd BLAST27

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation
Ligand2Fe-2S, Iron, Iron-sulfur, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional activator SoxR homolog
Gene namesi
Name:soxR
Ordered Locus Names:CV_2793
OrganismiChromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
Taxonomic identifieri243365 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNeisserialesChromobacteriaceaeChromobacterium
Proteomesi
  • UP000001424 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000981561 – 148HTH-type transcriptional activator SoxR homologAdd BLAST148

Interactioni

Protein-protein interaction databases

STRINGi243365.CV_2793

Structurei

3D structure databases

ProteinModelPortaliQ9ZHI4
SMRiQ9ZHI4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 73HTH merR-typePROSITE-ProRule annotationAdd BLAST69

Phylogenomic databases

eggNOGiENOG4108Z4X Bacteria
COG0789 LUCA
HOGENOMiHOG000266085
KOiK13639
OMAiNGNQRRY
OrthoDBiPOG091H043R

Family and domain databases

CDDicd01110 HTH_SoxR, 1 hit
InterProiView protein in InterPro
IPR009061 DNA-bd_dom_put_sf
IPR000551 MerR-type_HTH_dom
IPR010211 Redox-sen_tscrpt-act_SoxR
IPR015358 Tscrpt_reg_MerR_DNA-bd
PANTHERiPTHR30204:SF0 PTHR30204:SF0, 1 hit
PfamiView protein in Pfam
PF00376 MerR, 1 hit
PF09278 MerR-DNA-bind, 1 hit
PRINTSiPR00040 HTHMERR
SMARTiView protein in SMART
SM00422 HTH_MERR, 1 hit
SUPFAMiSSF46955 SSF46955, 1 hit
TIGRFAMsiTIGR01950 SoxR, 1 hit
PROSITEiView protein in PROSITE
PS00552 HTH_MERR_1, 1 hit
PS50937 HTH_MERR_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9ZHI4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEESTITIGR LAKRTGVAAS ALRFYEARGL IHSVGEAGKT RRYRRDAIRR
60 70 80 90 100
VSFIRVAQAM GMSLQDIGAA LADLPSQRTP TADDWARISQ AWKPLLQERI
110 120 130 140
DALCRLRDQL DSCIGCGCLS LERCKLYNPD DKAGEQGCGP RFLLDEKA
Length:148
Mass (Da):16,427
Last modified:October 24, 2003 - v2
Checksum:i605B3C30BA7C0826
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti101D → E in AAC69613 (Ref. 1) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF061445 Genomic DNA Translation: AAC69613.1
AE016825 Genomic DNA Translation: AAQ60461.1
RefSeqiWP_011136340.1, NC_005085.1

Genome annotation databases

EnsemblBacteriaiAAQ60461; AAQ60461; CV_2793
GeneIDi24945202
KEGGicvi:CV_2793

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF061445 Genomic DNA Translation: AAC69613.1
AE016825 Genomic DNA Translation: AAQ60461.1
RefSeqiWP_011136340.1, NC_005085.1

3D structure databases

ProteinModelPortaliQ9ZHI4
SMRiQ9ZHI4
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243365.CV_2793

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAQ60461; AAQ60461; CV_2793
GeneIDi24945202
KEGGicvi:CV_2793

Phylogenomic databases

eggNOGiENOG4108Z4X Bacteria
COG0789 LUCA
HOGENOMiHOG000266085
KOiK13639
OMAiNGNQRRY
OrthoDBiPOG091H043R

Family and domain databases

CDDicd01110 HTH_SoxR, 1 hit
InterProiView protein in InterPro
IPR009061 DNA-bd_dom_put_sf
IPR000551 MerR-type_HTH_dom
IPR010211 Redox-sen_tscrpt-act_SoxR
IPR015358 Tscrpt_reg_MerR_DNA-bd
PANTHERiPTHR30204:SF0 PTHR30204:SF0, 1 hit
PfamiView protein in Pfam
PF00376 MerR, 1 hit
PF09278 MerR-DNA-bind, 1 hit
PRINTSiPR00040 HTHMERR
SMARTiView protein in SMART
SM00422 HTH_MERR, 1 hit
SUPFAMiSSF46955 SSF46955, 1 hit
TIGRFAMsiTIGR01950 SoxR, 1 hit
PROSITEiView protein in PROSITE
PS00552 HTH_MERR_1, 1 hit
PS50937 HTH_MERR_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiSOXR_CHRVO
AccessioniPrimary (citable) accession number: Q9ZHI4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 19, 2002
Last sequence update: October 24, 2003
Last modified: November 7, 2018
This is version 114 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again