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Entry version 146 (02 Dec 2020)
Sequence version 1 (01 May 1999)
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Protein
Submitted name:

Protein export

Gene

secD

Organism
Chlamydia pneumoniae (Chlamydophila pneumoniae)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processProtein transport, TranslocationARBA annotation, Transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Protein exportImported
Submitted name:
SecD/SecF fusion proteinImported
Submitted name:
SecDF protein, putativeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:secDImported
Synonyms:secFImported
Ordered Locus Names:CP_0186Imported, CPn_0564Imported
ORF Names:BN1224_CV15_C_00250Imported, BN1224_GiD_A_05860Imported, BN1224_H12_EI_00020Imported, BN1224_MUL2216_F_01070Imported, BN1224_Panola_I_00060Imported, BN1224_PB1_B_05730Imported, BN1224_U1271_C_04160Imported, BN1224_UZG1_A_05860Imported, BN1224_Wien2_G_02110Imported, BN1224_YK41_BR_00020Imported, CWL029c_D_00930Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiChlamydia pneumoniae (Chlamydophila pneumoniae)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri83558 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaChlamydiaeChlamydialesChlamydiaceaeChlamydia/Chlamydophila groupChlamydia
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000583 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000000801 Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei911 – 930HelicalSequence analysisAdd BLAST20
Transmembranei935 – 955HelicalSequence analysisAdd BLAST21
Transmembranei961 – 982HelicalSequence analysisAdd BLAST22
Transmembranei1003 – 1027HelicalSequence analysisAdd BLAST25
Transmembranei1039 – 1062HelicalSequence analysisAdd BLAST24
Transmembranei1090 – 1110HelicalSequence analysisAdd BLAST21
Transmembranei1234 – 1253HelicalSequence analysisAdd BLAST20
Transmembranei1260 – 1284HelicalSequence analysisAdd BLAST25
Transmembranei1290 – 1313HelicalSequence analysisAdd BLAST24
Transmembranei1343 – 1362HelicalSequence analysisAdd BLAST20
Transmembranei1368 – 1395HelicalSequence analysisAdd BLAST28

GO - Cellular componenti

Keywords - Cellular componenti

Cell membraneARBA annotation, Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
115713.CPn_0564

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG0341, Bacteria
COG0342, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_004081_1_0_0

Database of Orthologous Groups

More...
OrthoDBi
410730at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR005791, SecD
IPR022813, SecD/SecF_arch_bac
IPR022645, SecD/SecF_bac
IPR022646, SecD/SecF_CS
IPR005665, SecF_bac

The PANTHER Classification System

More...
PANTHERi
PTHR30081, PTHR30081, 2 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07549, Sec_GG, 1 hit
PF02355, SecD_SecF, 2 hits

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR01755, SECFTRNLCASE

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00916, 2A0604s01, 1 hit
TIGR00966, 3a0501s07, 1 hit
TIGR01129, secD, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9Z7Y9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKQKVKRNFA IIICVFALAL YYVLPTCLYY AKPLDKKIDG NEAEHIIKSF
60 70 80 90 100
TKQAQQVRKD VIPRVSAILS SLHLRGHIQQ HPAIPDIVSV RFKRGEDAED
110 120 130 140 150
FIGNLVHGEP NVPIKSARLH VVGYSREHDD HVIQVASSIN TSLVESDFSF
160 170 180 190 200
VSYSSENEQE MASSILQRVY SACTFPKQKD CSCSYPSIWE TAPKEQLLQY
210 220 230 240 250
AKNLSSGFEV FSSRLSAFCQ QSFSSNQDRL AFLSRLSSLS NDAAIDVEDQ
260 270 280 290 300
KLLKSVYETL SQTACIRSLD CPYIEGLRLD CSESSLFFSS IEYCPKERKI
310 320 330 340 350
FLTLHSDLLA QRTSLSKEQR LDFDSRLAVE KQKLSKNLTV QVEDYNNGFS
360 370 380 390 400
FQWMDKDTQG KIILQGERLL QGIAEHLTAL TLHRPAAESC DLIPENFPVF
410 420 430 440 450
CRQPRESEAF GCYIFSPNTD CKHFSKGSVY ILLKGLRSIV AKYQQGGGKE
460 470 480 490 500
LQSFEKDLQN LYNCFSHTEA ISWTLGEDQV LEIRHPLQQF LDVWGEGFVI
510 520 530 540 550
GKEGCAFLEV KDIQDRLATV NQIEKNRQSD LVRWHEQYRH AKCSMDLQER
560 570 580 590 600
LSAPIPYQNL FLENMKLNMR KFSRGENILR LGIDFVGGRQ LLLSFKDHQG
610 620 630 640 650
KQLTDKEDIL KVSDELCARL NKLGVSEIEL RREGDYIHLS VPGSSTISSS
660 670 680 690 700
EILGTSKMSF HVVNERFSSY SASRYEVQRF LDYLWFTSQA QGKTSPEEIN
710 720 730 740 750
TFASALFNEE VDVPPSVHEA ITKLKSEGLA FSPSGCETPS TDLDTTFSMI
760 770 780 790 800
AIGKDAEQKA NPLVIVFRNY ALDGASLKDI RPEFAAGEGY VLNFSVKDTS
810 820 830 840 850
PKKMAEKLSP TESFHTWTSA YCQEGISGTA NGQYSANRGW RMAVVIDGYM
860 870 880 890 900
VSSPILNVPL KNHASVSGKF THREVSKLAS DLKSGAMSFV PEVLSEETIS
910 920 930 940 950
SDLGKKQCTQ GIISACCGLA MLIVLMSVYY RFGGVIASGA VLLNLLLIWA
960 970 980 990 1000
ALQYLDAPLT LSGLAGIVLA MGMAVDANVL VFERIREEFL LSQSLKKSVE
1010 1020 1030 1040 1050
KGYTKAFGAI FDSNLTTVLA SALLFFLDTG PIKGFALTLI LGIFSSMFTA
1060 1070 1080 1090 1100
LFMTKFFFML WMNKTQHTQL HMMNKFVGIK HDFLRGCKKL WAVSGSVFLL
1110 1120 1130 1140 1150
GCVALGFGAW NSVLGMDFKG GYAFTFNPKE HGISDVAQMR GKVVHKLQEA
1160 1170 1180 1190 1200
GLSSRDFRIQ TFGSSEKIKI YFSDKALSYT KADTSLSPKI NDHELALAVG
1210 1220 1230 1240 1250
LLSETGLDFS TETLNETQNF WSKVSSKLSK KMRYQATIGL LGALAIILLY
1260 1270 1280 1290 1300
VSLRFEWQYA FSAVCALIHD LLATCAVLFI AHFFLKKIQI DLQAIGALMT
1310 1320 1330 1340 1350
VLGYSLNNTL IIFDRIREDR QANLFTPMHV LVNDALQKTF SRTVMTTATT
1360 1370 1380 1390 1400
LSVLLMLLFI GGSSVFNFAF IMTIGILLGT LSSLYIAPPL LLFMVRKENR

SK
Length:1,402
Mass (Da):156,827
Last modified:May 1, 1999 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0D966905EF7945C4
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AE001363 Genomic DNA Translation: AAD18704.1
AE002161 Genomic DNA Translation: AAF38059.1
LN846999 Genomic DNA Translation: CRI38192.1
LN847004 Genomic DNA Translation: CRI40456.1
LN847008 Genomic DNA Translation: CRI41585.1
LN847188 Genomic DNA Translation: CRI43812.1
LN847227 Genomic DNA Translation: CRI46052.1
LN847234 Genomic DNA Translation: CRI47183.1
LN847244 Genomic DNA Translation: CRI49476.1
LN847240 Genomic DNA Translation: CRI50604.1
LN847245 Genomic DNA Translation: CRI51731.1
LN847254 Genomic DNA Translation: CRI53194.1
LN849043 Genomic DNA Translation: CRI73225.1

Protein sequence database of the Protein Information Resource

More...
PIRi
E72062
H86560

NCBI Reference Sequences

More...
RefSeqi
NP_224760.1, NC_000922.1
WP_010883202.1, NZ_LN847257.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AAD18704; AAD18704; CPn_0564
AAF38059; AAF38059; CP_0186
CRI48346; CRI48346; BN1224_PB2_A_05870

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
45050608

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
cpa:CP_0186
cpn:CPn0564

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|115713.3.peg.626

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE001363 Genomic DNA Translation: AAD18704.1
AE002161 Genomic DNA Translation: AAF38059.1
LN846999 Genomic DNA Translation: CRI38192.1
LN847004 Genomic DNA Translation: CRI40456.1
LN847008 Genomic DNA Translation: CRI41585.1
LN847188 Genomic DNA Translation: CRI43812.1
LN847227 Genomic DNA Translation: CRI46052.1
LN847234 Genomic DNA Translation: CRI47183.1
LN847244 Genomic DNA Translation: CRI49476.1
LN847240 Genomic DNA Translation: CRI50604.1
LN847245 Genomic DNA Translation: CRI51731.1
LN847254 Genomic DNA Translation: CRI53194.1
LN849043 Genomic DNA Translation: CRI73225.1
PIRiE72062
H86560
RefSeqiNP_224760.1, NC_000922.1
WP_010883202.1, NZ_LN847257.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi115713.CPn_0564

Genome annotation databases

EnsemblBacteriaiAAD18704; AAD18704; CPn_0564
AAF38059; AAF38059; CP_0186
CRI48346; CRI48346; BN1224_PB2_A_05870
GeneIDi45050608
KEGGicpa:CP_0186
cpn:CPn0564
PATRICifig|115713.3.peg.626

Phylogenomic databases

eggNOGiCOG0341, Bacteria
COG0342, Bacteria
HOGENOMiCLU_004081_1_0_0
OrthoDBi410730at2

Family and domain databases

InterProiView protein in InterPro
IPR005791, SecD
IPR022813, SecD/SecF_arch_bac
IPR022645, SecD/SecF_bac
IPR022646, SecD/SecF_CS
IPR005665, SecF_bac
PANTHERiPTHR30081, PTHR30081, 2 hits
PfamiView protein in Pfam
PF07549, Sec_GG, 1 hit
PF02355, SecD_SecF, 2 hits
PRINTSiPR01755, SECFTRNLCASE
TIGRFAMsiTIGR00916, 2A0604s01, 1 hit
TIGR00966, 3a0501s07, 1 hit
TIGR01129, secD, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9Z7Y9_CHLPN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9Z7Y9
Secondary accession number(s): Q7AIL0, Q7BX85, Q7DEZ2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 1999
Last sequence update: May 1, 1999
Last modified: December 2, 2020
This is version 146 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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