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Entry version 128 (02 Dec 2020)
Sequence version 2 (07 Jun 2004)
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Protein

Synaptopodin

Gene

Synpo

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Actin-associated protein that may play a role in modulating actin-based shape and motility of dendritic spines and renal podocyte foot processes. Seems to be essential for the formation of spine apparatuses in spines of telencephalic neurons, which is involved in synaptic plasticity.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionActin-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Synaptopodin
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Synpo
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRattus norvegicus (Rat)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10116 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002494 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 18

Organism-specific databases

Rat genome database

More...
RGDi
620668, Synpo

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell junction, Cell projection, Cytoplasm, Cytoskeleton, Synapse, Tight junction

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001876721 – 931SynaptopodinAdd BLAST931

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei134PhosphoserineBy similarity1
Modified residuei202PhosphoserineBy similarity1
Modified residuei222PhosphoserineBy similarity1
Modified residuei258PhosphoserineCombined sources1
Modified residuei490PhosphoserineCombined sources1
Modified residuei514PhosphoserineCombined sources1
Modified residuei549PhosphothreonineCombined sources1
Modified residuei569PhosphoserineBy similarity1
Modified residuei691PhosphoserineBy similarity1
Modified residuei742PhosphoserineBy similarity1
Modified residuei746PhosphoserineBy similarity1
Modified residuei767PhosphoserineCombined sources1
Modified residuei771PhosphothreonineBy similarity1
Modified residuei835PhosphoserineCombined sources1
Modified residuei850Omega-N-methylarginineBy similarity1
Modified residuei856PhosphoserineBy similarity1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

O-glycosylated.By similarity

Keywords - PTMi

Glycoprotein, Methylation, Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9Z327

PRoteomics IDEntifications database

More...
PRIDEi
Q9Z327

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q9Z327

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q9Z327

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed at high levels in brain and at moderate, but still significant levels in the heart, skeletal muscle, lung and kidney. In brain, expressed in the cerebral cortex, hippocampus, olfactory bulb and striatum.2 Publications

<p>This subsection of the 'Expression' section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified 'at the protein level'.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

First expressed around day 15, increased thereafter, and reached the maximum level of expression in the adult brain. In vitro, in neurons, expression started at E12, increased thereafter in parallel with process of spine formation, and reached its maximum level after 25 days.1 Publication

<p>This subsection of the 'Expression' section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

Depends on the long term potentiation (LTP) and the activation of NMDA receptor signaling.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSRNOG00000019181, Expressed in frontal cortex and 20 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9Z327, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9Z327, RN

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with BAIAP1.

Interacts with actin.

Interacts (via PPxY motifs) with WWC1 (via WW domains) (By similarity).

By similarity

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
248774, 5 interactors

Protein interaction database and analysis system

More...
IntActi
Q9Z327, 1 interactor

STRING: functional protein association networks

More...
STRINGi
10116.ENSRNOP00000025989

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi551 – 554PPxY motif4
Motifi570 – 573PPxY motif4

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi768 – 931Pro-richAdd BLAST164

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the synaptopodin family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502R7RM, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00950000183054

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_071316_1_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9Z327

Database of Orthologous Groups

More...
OrthoDBi
691538at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9Z327

TreeFam database of animal gene trees

More...
TreeFami
TF330867

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR028753, Synpo

The PANTHER Classification System

More...
PANTHERi
PTHR24217:SF13, PTHR24217:SF13, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: Q9Z327-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MLGTHFPPPP LGPSEGRAAP CTFQIPDGSY RCLALEAEES SSEDGLQGEV
60 70 80 90 100
RLVDLEEEGT SKSRVNHGTP PLSRAPAIIQ PSSCCREARG GFQHSDKPSR
110 120 130 140 150
EWDVVQARKV MTASVSSSPV PRVAQKPALG RSTSFTEKDL KEAKERSQRI
160 170 180 190 200
AAQLTTPPSS NSRGVQLFNR RRQRVNEFTL ESRGQRSPKL SQEALQTGHP
210 220 230 240 250
SSPIGHAPGL SVNPTSPSKP GSPKHSSSQS PSRGVPGHIM EGYSEEASLL
260 270 280 290 300
RHLEKVASEE EEVPLVVYLK ENAALLTANG LHLSQNRETQ QSSPNPPETE
310 320 330 340 350
EVPSPAADIN QNPSSPNATL TTAASNSHHN QPTADVNQNP PATITPVQQN
360 370 380 390 400
SSETQCSPNG TLDSKPNTPS ADDGQRPVPA EEVRSSILLI DKVSAPPSAA
410 420 430 440 450
SPFSREATPL SSSGPPAADL MSSSLLIGMQ PSTLVASAEQ EVSGHAAVTT
460 470 480 490 500
PTKVYSEVHL TLAKPASVVN RTARPFGMQS PGTTSQIEQS PMMGRRHFGE
510 520 530 540 550
KAWAPPASSM ADRSPQPQRH IMARSPMVER RLVGQRSPVV ERRPLGNFTP
560 570 580 590 600
PPTYAETLST APVASQVRSP PSYSTLYPSS DPKPPHLKGQ VVPANKTGIL
610 620 630 640 650
EESMARRGSR KSMFTFVEKP KVTPNPDLLD LVQTADEKRR QRDQGEVGME
660 670 680 690 700
DEPFALGAEA SNFQQEPIAR DRSGPAAAEE TVPEWASCLK SPRIQAKPKP
710 720 730 740 750
KPNQNLSEAS GKGAELYARR QSRMEKYVIE SSGHAELARC PSPTMSLPSS
760 770 780 790 800
WKYTTNAPGG FRVASLSPAR TPPASLYHGY LPENGVLRPE PTKQQPHQMR
810 820 830 840 850
PSLYALSPVK EPAKISSRAT SSRASSRTVS PRAASPAKPS SLDLVPNLPR
860 870 880 890 900
AGLPPSPALP RPSRSSPGLY NAPVQDSLQP TAVSPTYSSD ISPVSPSRAW
910 920 930
SPRAKQAPRP SFSTRNAGIE AQVWKPSFCF K
Length:931
Mass (Da):99,986
Last modified:June 7, 2004 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4D50DDBF129EC5E1
GO
Isoform 2 (identifier: Q9Z327-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-239: Missing.
     923-931: VWKPSFCFK → DRPESLPTSP...VRKLPESEEL

Show »
Length:976
Mass (Da):105,253
Checksum:iC88A35DB59D6E0CF
GO
Isoform 3 (identifier: Q9Z327-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-239: Missing.

Show »
Length:692
Mass (Da):74,337
Checksum:i2EB58800D609B7CD
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0H2UHQ9A0A0H2UHQ9_RAT
Synaptopodin
Synpo
963Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti561A → V in BAA34925 (PubMed:9314539).Curated1
Sequence conflicti566Q → R in BAA34925 (PubMed:9314539).Curated1
Sequence conflicti797H → Y in BAA34925 (PubMed:9314539).Curated1
Sequence conflicti815I → T in BAA34925 (PubMed:9314539).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0104801 – 239Missing in isoform 2 and isoform 3. CuratedAdd BLAST239
Alternative sequenceiVSP_010481923 – 931VWKPSFCFK → DRPESLPTSPPWTPGASRPP SSLDGWIITSVGTCPEYSQE LTACWMIPKEQKEPVMAVPG DLADPVPSLDLGKKLSVPQD LMIEELSLRNNRGSLLFQKR QRRVQKFTFELSESLQGILA GSARGKAAGRAAVATVPNGL EEQNHHSETHTHVFQGSPGD SGIAHPGAAGTGSVRSPSVL APGYAEPLKGVPPEKFNHTA IPKGYRCPWQEFISYRDYYP SGSRSHTPIPRDYRNFNKTP VPFGGPHVGEAIFHAGTPFV PEPFSGLELLRLRPNFNRVA QGWVRKLPESEEL in isoform 2. Curated9

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AB013130 mRNA Translation: BAA34925.1
AABR03110007 Genomic DNA No translation available.

NCBI Reference Sequences

More...
RefSeqi
NP_067727.2, NM_021695.2 [Q9Z327-3]
XP_017456508.1, XM_017601019.1 [Q9Z327-1]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSRNOT00000064686; ENSRNOP00000061109; ENSRNOG00000019181 [Q9Z327-3]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
60324

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
rno:60324

UCSC genome browser

More...
UCSCi
RGD:620668, rat [Q9Z327-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB013130 mRNA Translation: BAA34925.1
AABR03110007 Genomic DNA No translation available.
RefSeqiNP_067727.2, NM_021695.2 [Q9Z327-3]
XP_017456508.1, XM_017601019.1 [Q9Z327-1]

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi248774, 5 interactors
IntActiQ9Z327, 1 interactor
STRINGi10116.ENSRNOP00000025989

PTM databases

iPTMnetiQ9Z327
PhosphoSitePlusiQ9Z327

Proteomic databases

PaxDbiQ9Z327
PRIDEiQ9Z327

Genome annotation databases

EnsembliENSRNOT00000064686; ENSRNOP00000061109; ENSRNOG00000019181 [Q9Z327-3]
GeneIDi60324
KEGGirno:60324
UCSCiRGD:620668, rat [Q9Z327-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
11346
RGDi620668, Synpo

Phylogenomic databases

eggNOGiENOG502R7RM, Eukaryota
GeneTreeiENSGT00950000183054
HOGENOMiCLU_071316_1_0_1
InParanoidiQ9Z327
OrthoDBi691538at2759
PhylomeDBiQ9Z327
TreeFamiTF330867

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9Z327

Gene expression databases

BgeeiENSRNOG00000019181, Expressed in frontal cortex and 20 other tissues
ExpressionAtlasiQ9Z327, baseline and differential
GenevisibleiQ9Z327, RN

Family and domain databases

InterProiView protein in InterPro
IPR028753, Synpo
PANTHERiPTHR24217:SF13, PTHR24217:SF13, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSYNPO_RAT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9Z327
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 7, 2004
Last sequence update: June 7, 2004
Last modified: December 2, 2020
This is version 128 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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