UniProtKB - Q9YYU3 (Q9YYU3_9HIV1)
Protein Nef
nef
Functioni
Miscellaneous
Caution
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sitei | 20 | Might play a role in AP-1 recruitment to the Nef-MHC-I complexUniRule annotation | 1 |
GO - Molecular functioni
- GTP binding Source: UniProtKB-UniRule
- SH3 domain binding Source: UniProtKB-UniRule
GO - Biological processi
- pathogenesis Source: UniProtKB-KW
- suppression by virus of host adaptive immune response Source: UniProtKB-UniRule
- suppression by virus of host antigen processing and presentation of peptide antigen via MHC class I Source: UniProtKB-UniRule
- suppression by virus of host antigen processing and presentation of peptide antigen via MHC class II Source: UniProtKB-UniRule
- suppression by virus of host autophagy Source: UniProtKB-UniRule
Keywordsi
Biological process | ApoptosisUniRule annotationARBA annotation, Host-virus interaction, Inhibition of host adaptive immune response by virus, Inhibition of host autophagy by virusUniRule annotation, Inhibition of host MHC class I molecule presentation by virusUniRule annotation, Inhibition of host MHC class II molecule presentation by virusUniRule annotation, Viral immunoevasion, VirulenceUniRule annotationARBA annotation |
Names & Taxonomyi
Protein namesi | Recommended name: Protein NefUniRule annotationAlternative name(s): 3'ORFUniRule annotation Negative factorUniRule annotation Short name: F-proteinUniRule annotation Cleaved into the following chain: C-terminal core proteinUniRule annotation |
Gene namesi | Name:nefUniRule annotationImported |
Organismi | Human immunodeficiency virus 1Imported |
Taxonomic identifieri | 11676 [NCBI] |
Taxonomic lineagei | Viruses › Riboviria › Pararnavirae › Artverviricota › Revtraviricetes › Ortervirales › Retroviridae › Orthoretrovirinae › Lentivirus |
Virus hosti | Homo sapiens (Human) [TaxID: 9606] |
Subcellular locationi
- Host cell membrane UniRule annotation; Lipid-anchor UniRule annotation; Cytoplasmic side UniRule annotation
- Virion UniRule annotation
- Secreted UniRule annotation
- Host Golgi apparatus membrane UniRule annotation Note: TGN localization requires PACS1. Associates with the inner plasma membrane through its N-terminal domain. Nef stimulates its own export via the release of exosomes. Incorporated in virions at a rate of about 10 molecules per virion, where it is cleaved.UniRule annotation
GO - Cellular componenti
- extracellular region Source: UniProtKB-SubCell
- host cell Golgi membrane Source: UniProtKB-SubCell
- host cell plasma membrane Source: UniProtKB-SubCell
- membrane Source: UniProtKB-UniRule
- virion Source: UniProtKB-SubCell
Keywords - Cellular componenti
Host cell membraneUniRule annotation, Host Golgi apparatusUniRule annotation, Host membrane, Membrane, SecretedUniRule annotation, VirionUniRule annotationPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Initiator methioninei | Removed; by hostUniRule annotation | |||
ChainiPRO_5023474952 | 2 – 215 | Protein NefUniRule annotationAdd BLAST | 214 | |
ChainiPRO_5023474951 | 66 – 215 | C-terminal core proteinUniRule annotationAdd BLAST | 150 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Lipidationi | 2 | N-myristoyl glycine; by hostUniRule annotation | 1 | |
Modified residuei | 6 | Phosphoserine; by hostUniRule annotation | 1 |
Post-translational modificationi
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sitei | 65 – 66 | Cleavage; by viral proteaseUniRule annotation | 2 |
Keywords - PTMi
Lipoprotein, MyristateUniRule annotationARBA annotation, PhosphoproteinUniRule annotationARBA annotationExpressioni
Inductioni
Keywords - Developmental stagei
Early proteinUniRule annotationInteractioni
Subunit structurei
Monomer; cytosolic form. Homodimer; membrane bound form.
Interacts with Nef associated p21-activated kinase (PAK2); this interaction activates PAK2. Associates with the Nef-MHC-I-AP1 complex; this complex is required for MHC-I internalization.
Interacts (via C-terminus) with host PI3-kinase.
Interacts with host PACS1; this interaction seems to be weak.
Interacts with host PACS2.
Interacts with host LCK and MAPK3; these interactions inhibit the kinase activity of the latters.
Interacts with host ATP6V1H; this interaction may play a role in CD4 endocytosis. Associates with the CD4-Nef-AP2 complex; this complex is required for CD4 internalization.
Interacts with host AP2 subunit alpha and AP2 subunit sigma2.
Interacts with TCR-zeta chain; this interaction up-regulates the Fas ligand (FasL) surface expression.
Interacts with host HCK, LYN, and SRC; these interactions activate the Src family kinases.
Interacts with MAP3K5; this interaction inhibits the Fas and TNFR-mediated death signals.
Interacts with beta-COP and PTE1.
Interacts with human RACK1; this increases Nef phosphorylation by PKC.
Interacts with TP53; this interaction decreases the half-life of TP53, protecting the infected cell against p53-mediated apoptosis.
UniRule annotationGO - Molecular functioni
- SH3 domain binding Source: UniProtKB-UniRule
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 16 – 50 | DisorderedSequence analysisAdd BLAST | 35 | |
Regioni | 78 – 87 | SH3-binding; interaction with Src family tyrosine kinasesUniRule annotation | 10 | |
Regioni | 117 – 133 | Mediates dimerization, Nef-PTE1 interactionUniRule annotationAdd BLAST | 17 | |
Regioni | 157 – 189 | Binding to ATP6V1HUniRule annotationAdd BLAST | 33 |
Motif
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Motifi | 81 – 84 | PxxP; stabilizes the interaction of NEF/MHC-I with host AP1M1; necessary for MHC-I internalizationUniRule annotation | 4 | |
Motifi | 173 – 174 | Dileucine internalization motif; necessary for CD4 internalizationUniRule annotation | 2 | |
Motifi | 183 – 184 | Diacidic; necessary for CD4 internalizationUniRule annotation | 2 |
Domaini
Sequence similaritiesi
Keywords - Domaini
SH3-bindingUniRule annotationARBA annotationFamily and domain databases
Gene3Di | 3.30.62.10, 1 hit 4.10.890.10, 1 hit |
HAMAPi | MF_04078, NEF_HIV, 1 hit |
InterProi | View protein in InterPro IPR027480, HIV-1_Nef_anchor_sf IPR027481, HIV-1_Nef_core_sf IPR001558, HIV_Nef |
Pfami | View protein in Pfam PF00469, F-protein, 1 hit |
SUPFAMi | SSF55671, SSF55671, 1 hit |
i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
10 20 30 40 50
MGSKWSKSSV IGWPAVRERM RRAGPRPEPR TEPAADGVGA VSRDLERHGA
60 70 80 90 100
ITSSNTATNN AACAWLEAQE EEEEVGFPVR PQVPLRPMTY KGALDLSHFL
110 120 130 140 150
KEKGGLDGLI YSQKRQDILD LWVYHTQGFF PDWQNYTPGP GTRFPLTFGW
160 170 180 190 200
CFKLVPVEPD KVEEANEGEK NCLLHPMSLX GMDDPEKEVL VWKFDSSLAF
210
HHVARELHPE YYKNC
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF011483 Genomic DNA Translation: AAD01461.1 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF011483 Genomic DNA Translation: AAD01461.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
3VXM | X-ray | 2.50 | C | 143-152 | [»] | |
3VXO | X-ray | 2.61 | C/F | 143-152 | [»] | |
3VXU | X-ray | 2.70 | C/H | 143-152 | [»] | |
3W0W | X-ray | 2.60 | C | 143-152 | [»] | |
SMRi | Q9YYU3 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Family and domain databases
Gene3Di | 3.30.62.10, 1 hit 4.10.890.10, 1 hit |
HAMAPi | MF_04078, NEF_HIV, 1 hit |
InterProi | View protein in InterPro IPR027480, HIV-1_Nef_anchor_sf IPR027481, HIV-1_Nef_core_sf IPR001558, HIV_Nef |
Pfami | View protein in Pfam PF00469, F-protein, 1 hit |
SUPFAMi | SSF55671, SSF55671, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | Q9YYU3_9HIV1 | |
Accessioni | Q9YYU3Primary (citable) accession number: Q9YYU3 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | May 1, 1999 |
Last sequence update: | May 1, 1999 | |
Last modified: | December 2, 2020 | |
This is version 108 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |