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Entry version 45 (02 Jun 2021)
Sequence version 1 (01 May 1999)
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Protein

Putative major capsid protein

Gene

S2

Organism
Fiji disease virus (isolate Sugarcane) (FDV)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Putative major capsid protein
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:S2
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiFiji disease virus (isolate Sugarcane) (FDV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri648172 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaOrthornaviraeDuplornaviricotaResentoviricetesReoviralesReoviridaeSpinareovirinaeFijivirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiSaccharum officinarum (Sugarcane) [TaxID: 4547]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001677 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Capsid protein, Inner capsid protein, T=2 icosahedral capsid protein, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004034041 – 1193Putative major capsid proteinAdd BLAST1193

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 64DisorderedSequence analysisAdd BLAST64

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9YX48-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKSFKWKENT EEKDDEEKTN EKEQNKPKEI DSKTEQEAKQ EKVSEADNSV
60 70 80 90 100
KDQEGITNKN RPEDISYVDD STIQAKTALT VEAITNIKGH LIESDQKLAD
110 120 130 140 150
ERASQYLQTL TNNAVRYTTT FGISEISDEI LIPYYHEIDF QGSDKELPSL
160 170 180 190 200
FSFETFVNEY YGTDLLTYEN EKFKTMMCDH PALSRSSEIF KVNAYKISIK
210 220 230 240 250
WTGETFNPSI GDPSNIGTTS LIKNIAYVGV HNSDNYKDRK LYSRLKMFLE
260 270 280 290 300
LAANCNIILK GCATRPLGID YELTKVSKKL NGAKILYNDK AHIIYNGIYH
310 320 330 340 350
PVTPFCDKVN DILKEGDVDI DFGKIFKYGR EVVTKINTYD ILNKGYAAID
360 370 380 390 400
QFTAYLINMG MQRLLDHRMN ANSYKDLTQA NYPSRVSLHV FDTLLDEFLY
410 420 430 440 450
VYKPTDQDWE FCLFVIMIDK EVRSLIMAKT KQMMLSRNLF GQSEIGLKLT
460 470 480 490 500
NLITRRVQGN IAKNAADYFI NVMSSGSIES LCNILCSEMY ARFSKFNIEC
510 520 530 540 550
SYLETEYLDL FKFLEILLAF IITPRLAWWN SHKFGKHLYD LMSVFCRSEL
560 570 580 590 600
IAYEARYGCF IKFERSAWVK VDKHVSVYGE NDLYDGIYFS FLISRTYSAE
610 620 630 640 650
EIKAFPFISK IYSLIEPLGD YINLDRKTRA KYPFFETTVR GYLPCSIISY
660 670 680 690 700
TDITTNNPVN TRVNNIGASI IDLSQRYFTH KPTKTSTKEA YDLILDTIGN
710 720 730 740 750
TANNLGILMH STVAPMLATL YDTFLFFADG FNKTSPWVVP RKLGYSGYNV
760 770 780 790 800
YADRNKSDAD RATYLIGGRA IVIPRNLDST NSMIYTYIGI FVHGVVRCDM
810 820 830 840 850
VTSTGSYITS SHYDPDSISI MPFNGSEITT LALKVVNHSK RINTVFTLFN
860 870 880 890 900
YLHSKSTDEI LSPVRERLSK FWTTSNARAL LNEITRIFNC PIERYFTQMN
910 920 930 940 950
AYDTMHSDPR VYKPTLYSVS STGNIDSVQP ANCAVNKQYE FGDTYLNEML
960 970 980 990 1000
KVISHVAFDD ELPLFRQTEG LVCGYFTSSS NSPDDYFSVD EDTLYFSIDL
1010 1020 1030 1040 1050
DEHPEVFTTV GTNGFSIQLQ FKKGNDDHAY TNPMSKDIPS IKFLINRIGN
1060 1070 1080 1090 1100
LNAHFVQFIN RMLSTQRHLI VLRKVVVDYN VITLGSWNDY TPTSSNVFDQ
1110 1120 1130 1140 1150
FVKDRDLINI KLDFYDTRFI IQNQSNQLLS QYLFESYRNI TPLKDFVVMG
1160 1170 1180 1190
GIFGNPNRAE SKLTDINKDI YCFGDDNDQT TKYFTSKKSK RVV
Length:1,193
Mass (Da):137,043
Last modified:May 1, 1999 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i802A588F9C950320
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF049704 Genomic RNA Translation: AAD02490.1

NCBI Reference Sequences

More...
RefSeqi
YP_249756.1, NC_007154.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
5075878

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:5075878

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF049704 Genomic RNA Translation: AAD02490.1
RefSeqiYP_249756.1, NC_007154.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

GeneIDi5075878
KEGGivg:5075878

Family and domain databases

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCAPSD_FDVS
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9YX48
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2011
Last sequence update: May 1, 1999
Last modified: June 2, 2021
This is version 45 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome
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