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UniProtKB - Q9YJW3 (POL1_BAYMY)

Entry version 102 (18 Sep 2019)
Sequence version 1 (01 May 1999)
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Protein

Genome polyprotein 1

Gene
N/A
Organism
Barley yellow mosaic virus (isolate China/Yancheng/1998) (BaYMV)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Cytoplasmic inclusion protein: has helicase activity. It may be involved in replication (By similarity).By similarity
Both 6K peptides are indispensable for virus replication.By similarity
Nuclear inclusion protein A: has proteolytic activity.By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • Hydrolyzes glutaminyl bonds, and activity is further restricted by preferences for the amino acids in P6 - P1' that vary with the species of potyvirus, e.g. Glu-Xaa-Xaa-Tyr-Xaa-Gln-|-(Ser or Gly) for the enzyme from tobacco etch virus. The natural substrate is the viral polyprotein, but other proteins and oligopeptides containing the appropriate consensus sequence are also cleaved. EC:3.4.22.44

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei1404For nuclear inclusion protein A activityPROSITE-ProRule annotation1
Active sitei1440For nuclear inclusion protein A activityPROSITE-ProRule annotation1
Active sitei1507For nuclear inclusion protein A activityPROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi487 – 494ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicase, Hydrolase, Nucleotidyltransferase, RNA-directed RNA polymerase, Transferase
Biological processViral RNA replication
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Genome polyprotein 1
Cleaved into the following 8 chains:
Protein P3
6 kDa protein 1
Short name:
6K1
Cytoplasmic inclusion protein (EC:3.6.4.-)
Short name:
CI
6 kDa protein 2
Short name:
6K2
Viral genome-linked protein
Alternative name(s):
VPg
Nuclear inclusion protein A (EC:3.4.22.44)
Short name:
NI-a
Short name:
NIa
Alternative name(s):
NIa-pro
Nuclear inclusion protein B (EC:2.7.7.48)
Short name:
NI-b
Short name:
NIb
Alternative name(s):
RNA-directed RNA polymerase
Capsid protein
Short name:
CP
Alternative name(s):
Coat protein
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBarley yellow mosaic virus (isolate China/Yancheng/1998) (BaYMV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri652104 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiViruses › Riboviria › Potyviridae › Bymovirus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiHordeum vulgare (Barley) [TaxID: 4513]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006704 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Capsid protein :

GO - Cellular componenti

Complete GO annotation on QuickGO ...

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_50000647731 – 328Protein P3Add BLAST328
ChainiPRO_5000064774329 – 3946 kDa protein 1Add BLAST66
ChainiPRO_5000064775395 – 1053Cytoplasmic inclusion proteinAdd BLAST659
ChainiPRO_50000647761054 – 11756 kDa protein 2Add BLAST122
ChainiPRO_50000647771176 – 1362Viral genome-linked proteinAdd BLAST187
ChainiPRO_50000647781363 – 1586Nuclear inclusion protein AAdd BLAST224
ChainiPRO_50000647791587 – 2113Nuclear inclusion protein BAdd BLAST527
ChainiPRO_50000647802114 – 2410Capsid proteinAdd BLAST297

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei1234O-(5'-phospho-RNA)-tyrosineBy similarity1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

VPg is uridylylated by the polymerase and is covalently attached to the 5'-end of the genomic RNA. This uridylylated form acts as a nucleotide-peptide primer for the polymerase (By similarity).By similarity
The viral RNA1 of bymoviruses is expressed as a single polyprotein which undergoes post-translational proteolytic processing by the main proteinase NIa-pro resulting in the production of at least eight individual proteins.Curated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections (‘Function’, ‘PTM / Processing’, ‘Pathology and Biotech’) according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei328 – 329CleavageSequence analysis2
Sitei394 – 395CleavageSequence analysis2
Sitei1053 – 1054CleavageSequence analysis2
Sitei1175 – 1176CleavageSequence analysis2
Sitei1338 – 1339CleavageSequence analysis2
Sitei1586 – 1587CleavageSequence analysis2
Sitei2114 – 2115CleavageSequence analysis2

Keywords - PTMi

Covalent protein-RNA linkage, Phosphoprotein

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		Q9YJW3

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini474 – 632Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST159
Domaini647 – 813Helicase C-terminalPROSITE-ProRule annotationAdd BLAST167
Domaini1359 – 1573Peptidase C4PROSITE-ProRule annotationAdd BLAST215
Domaini1857 – 1980RdRp catalyticPROSITE-ProRule annotationAdd BLAST124

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi583 – 586DEAH box4

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi147 – 150Poly-Ser4

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the bymoviruses polyprotein 1 family.Curated

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR009003 Peptidase_S1_PA
IPR001592 Poty_coat
IPR001730 Potyv_NIa-pro_dom
IPR013648 PP_Potyviridae
IPR001205 RNA-dir_pol_C
IPR007094 RNA-dir_pol_PSvirus

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00863 Peptidase_C4, 1 hit
PF00767 Poty_coat, 1 hit
PF08440 Poty_PP, 1 hit
PF00680 RdRP_1, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00487 DEXDc, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF50494 SSF50494, 1 hit
SSF52540 SSF52540, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51436 POTYVIRUS_NIA_PRO, 1 hit
PS50507 RDRP_SSRNA_POS, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9YJW3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEQTLAQAVS RRNKTDTPMA EERKHFSPMN FSANFVAPEL FYSANVRKIK 
        60         70         80         90        100
NIFKERSTTR FLDAISSDFE LVAFLTLSPA HLMQLETVLR QEMRSCAVPI 
       110        120        130        140        150
VTSDASFETV AVIKTALDGM RFHFGYTTLE KGWISMMRHA ESCLQESSSS 
       160        170        180        190        200
AVNDLQTPIK RVGSLLLSGK NRVEGCELSV LNLTARRFRI EYGLNGTYFG 
       210        220        230        240        250
EHVAMLRDLK RYIYGTVPKE FLWAKTKKHL PFTIPAWITR TPIDCFLFCL 
       260        270        280        290        300
RVIPILHRFG VAMSLIYFSC VAALNFPAFM GFLFKRQFAK YLAHSFAKHS 
       310        320        330        340        350
IYFMFLTIVA ILWSFRTFTS QKPKIVLQAR STAEKEKKLM MILASVVGIT 
       360        370        380        390        400
YLFDYDIAEA LGNCLHKISR LSSYLLDDHQ GIASRMFGAS YGLQAGDSAE 
       410        420        430        440        450
DAVTTIISDL LSVTFKIVDE DASQGTVEDA SETTFHSWVG VNTLAGRNMS 
       460        470        480        490        500
RPLQYSVNKT YALTPQNVQL QARAMADANN CWSMVVGHTG SGKSTYLPVQ 
       510        520        530        540        550
YSNYLSTKSD RRQQILICEP TQAATENVCA GVAANLGRAV YGRHEGWSRM 
       560        570        580        590        600
GDHCIQVMTY GSALQCHAMD PSFISTFDAI FLDEAHDVKE HSLVFESICD 
       610        620        630        640        650
TFKSVRKFYV SATPRDGSVC PEAARKYPLH VETSVCDSYR KFIAAQGGGD 
       660        670        680        690        700
LLDISKHDTA LVFLAGRPEC IKAANAWNAS VTGEKRAFSL SSDNFATDFS 
       710        720        730        740        750
MLTERLKTHK TIIFTTNIIE TGVTLSVDCV VDFGHTMRPC LDLNQKSLRL 
       760        770        780        790        800
DRRKVTRNER QQRIGPTGRL KDGYAIVCGD VDRAVNVISP DVLYGAALLS 
       810        820        830        840        850
FKHNVPFYMN ETFESSWLKG VTKAQADTMT IFKLPIFLTR DLINADGSVA 
       860        870        880        890        900
KEFLDVLKKH QFTTSDIKQA PSITAKHIFP TWASYFSLHQ ALHYGDDKDE 
       910        920        930        940        950
IPHELRYARV PFSVTTLSKF DWPALALACE KHRASMSNVF AGIEEPARVV 
       960        970        980        990       1000
TLQTNPANIQ ASITHLMHMS KNYKTLIENN QHVRQSMMTN VMYKWFSSTR 
      1010       1020       1030       1040       1050
ITKDLDRNLR RCTDNLAVVE ATLSSLRQIL AGNTQVHATP HMQSTLEDII 
      1060       1070       1080       1090       1100
GLQASDTLTE ESLASALGIF VPKSNLFLLL ATKGFKLVYV ICILLLVNLV 
      1110       1120       1130       1140       1150
YIGLRKWREH LKQKGSDEIL TNTMPVSEGG EILAEVMKME PKMRKNIKRD 
      1160       1170       1180       1190       1200
MDEAVESKLC GFTFVFPDDD KIGLEGKGNK YRPREDARLM YSTREDATFD 
      1210       1220       1230       1240       1250
AWNEKAKERR KKVTDKSEPE LRRAYEKRPY FNFYDLQTDS NILEAIFYTT 
      1260       1270       1280       1290       1300
EGDEFFRTAD PNKDMNLVAD KLRSFLDTKL VVGHHQRKLL EETAQVVIKD 
      1310       1320       1330       1340       1350
TKGTAHKMEI SQHDPDCLKQ NGSGKVGYPE HRGQFRQEGV AITSDYDLGV 
      1360       1370       1380       1390       1400
EFGTDTDNIT LEASTGILLS QVGVDVATRV GRISIGTFNM NCYFYNDWIL 
      1410       1420       1430       1440       1450
VPGHLQDRSG NVTIQFPDQT VQTTTDALNA NGVKRFYGLD VIAIRRPAIL 
      1460       1470       1480       1490       1500
RPRTKLVKAF AIEEPVIAQM VFVDAQGVRK FTQSDWARKG ENSGRWSHKI 
      1510       1520       1530       1540       1550
STVLGMCGCQ FWTLERQIDG IHVATNYTKK RNEFQPFTQE VVDFINGPGT 
      1560       1570       1580       1590       1600
KIPYCPWVFD RPACGYASHT ALFEKPTTLT DVIHMQASDG LHNINNAIEG 
      1610       1620       1630       1640       1650
FGSSLRGQLV SPPTESTRQR FDKLFGSGSF ELIGQMNKGL IDKHVIVGEN 
      1660       1670       1680       1690       1700
DDVYDFMREH PTFTWLKDFM NEYAPSVLSY SAYYKDLCKY NRAKHVLTYN 
      1710       1720       1730       1740       1750
PEELHYATKG LIKMLEDAGL TQGSVRTPQQ VISDIQWNTS AGPSYQGKKR 
      1760       1770       1780       1790       1800
DLCAHLSDDE VLHLAEVCRQ QFLEGKSTGV WNGSLKAELR TIEKVEPEKT 
      1810       1820       1830       1840       1850
RVFTASPITS LFAMKFYVDD FNKKFYATNL KAPHTVGINK FGRGWERLHD 
      1860       1870       1880       1890       1900
KLNRPGWLHG SGDGSRFDSS IDPFFFDVVK TIRKHFLPSE HHKAIDLIYD 
      1910       1920       1930       1940       1950
EILNTTICLA NGMVIKKNVG TQRQPSTVVD NTLVLMTAFL YAYIHKTGDR 
      1960       1970       1980       1990       2000
ELALLNERFI FVCNGDDNKF AISPQFDEEF GHDFSPELVE LGLTYEFDDI 
      2010       2020       2030       2040       2050
TSDICENPYM SLTMVKTPFG VGFSLPVERI IAIMQWSKKG GVLHSYLAGI 
      2060       2070       2080       2090       2100
SAIYESFNTP KLFKSIYAYL LWLTEEHEAE ILAAMTQSST ALPIPSMLDV 
      2110       2120       2130       2140       2150
YRLHYGDDEI WLQAADPLTD AQKEAAHTAA ADRARLDLAD ADRRRKVEAD 
      2160       2170       2180       2190       2200
RVEAARVKKA ADAALKPVNL TATRMPTEDD GKLKTPSGAR IPSSAADGNW 
      2210       2220       2230       2240       2250
SVPATKQVNA GLTLKIPLNK LKSVPKSVME HNNSVALESE LKAWTDAVRT 
      2260       2270       2280       2290       2300
SLGITTDEAW IDALIPFIGW CCNNGTSDKH AENQVMQIDS GKGAVTEMSL 
      2310       2320       2330       2340       2350
SPFIVHARMN GGLRRIMRNY SDETVLLITN NKLVAHWSMK HGASANAKYA 
      2360       2370       2380       2390       2400
FDFFVPRSWM NPQDIEVSKQ ARLAALGTGT YNTMLTSDTT NLRKTTNHRV 
      2410
LDSDGHPELT
Length:2,410
Mass (Da):270,904
Last modified:May 1, 1999 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i277319D1E4CCA1F2
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AJ132268 Genomic RNA Translation: CAA10637.1

NCBI Reference Sequences

More...RefSeqi		NP_148999.1, NC_002990.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...GeneIDi		963861

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		vg:963861

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ132268 Genomic RNA Translation: CAA10637.1
RefSeqiNP_148999.1, NC_002990.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Proteomic databases

PRIDEiQ9YJW3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi963861
KEGGivg:963861

Family and domain databases

InterProiView protein in InterPro
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR009003 Peptidase_S1_PA
IPR001592 Poty_coat
IPR001730 Potyv_NIa-pro_dom
IPR013648 PP_Potyviridae
IPR001205 RNA-dir_pol_C
IPR007094 RNA-dir_pol_PSvirus
PfamiView protein in Pfam
PF00863 Peptidase_C4, 1 hit
PF00767 Poty_coat, 1 hit
PF08440 Poty_PP, 1 hit
PF00680 RdRP_1, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SUPFAMiSSF50494 SSF50494, 1 hit
SSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51436 POTYVIRUS_NIA_PRO, 1 hit
PS50507 RDRP_SSRNA_POS, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPOL1_BAYMY
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9YJW3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: May 1, 1999
Last modified: September 18, 2019
This is version 102 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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