Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Probable U6 snRNA-associated Sm-like protein LSm3

Gene

lsm3

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Binds specifically to the 3'-terminal U-tract of U6 snRNA.By similarity

GO - Molecular functioni

  • chromatin binding Source: PomBase
  • RNA binding Source: GO_Central
  • telomerase RNA binding Source: PomBase

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing

Enzyme and pathway databases

ReactomeiR-SPO-430039 mRNA decay by 5' to 3' exoribonuclease

Names & Taxonomyi

Protein namesi
Recommended name:
Probable U6 snRNA-associated Sm-like protein LSm3
Gene namesi
Name:lsm3
ORF Names:SPBC9B6.05c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC9B6.05c
PomBaseiSPBC9B6.05c lsm3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus, Spliceosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001255621 – 93Probable U6 snRNA-associated Sm-like protein LSm3Add BLAST93

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei84Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ9Y7M4
PaxDbiQ9Y7M4
PRIDEiQ9Y7M4

PTM databases

iPTMnetiQ9Y7M4

Interactioni

Subunit structurei

LSm subunits form a heteromer with a doughnut shape.By similarity

Protein-protein interaction databases

BioGridi276745, 7 interactors
IntActiQ9Y7M4, 1 interactor
STRINGi4896.SPBC9B6.05c.1

Structurei

Secondary structure

193
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliQ9Y7M4
SMRiQ9Y7M4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the snRNP Sm proteins family.Curated

Phylogenomic databases

HOGENOMiHOG000223550
InParanoidiQ9Y7M4
KOiK12622
OMAiGHMNLIL
OrthoDBiEOG092C5VL3
PhylomeDBiQ9Y7M4

Family and domain databases

CDDicd01730 LSm3, 1 hit
InterProiView protein in InterPro
IPR034105 Lsm3
IPR001163 LSM_dom_euk/arc
IPR010920 LSM_dom_sf
IPR040002 Sm-like_LSM3
PANTHERiPTHR13110 PTHR13110, 1 hit
PfamiView protein in Pfam
PF01423 LSM, 1 hit
SMARTiView protein in SMART
SM00651 Sm, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit

Sequencei

Sequence statusi: Complete.

Q9Y7M4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MESAQAVAEP LDLVRLSLDE IVYVKLRGDR ELNGRLHAYD EHLNMVLGDA
60 70 80 90
EEIVTIFDDE ETDKDKALKT IRKHYEMLFV RGDSVILIAP PRN
Length:93
Mass (Da):10,665
Last modified:May 1, 2000 - v2
Checksum:i86874A78670B1DCE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAB42366.2
PIRiT40786
RefSeqiNP_595747.1, NM_001021647.2

Genome annotation databases

EnsemblFungiiSPBC9B6.05c.1; SPBC9B6.05c.1:pep; SPBC9B6.05c
GeneIDi2540212
KEGGispo:SPBC9B6.05c

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAB42366.2
PIRiT40786
RefSeqiNP_595747.1, NM_001021647.2

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4EMGX-ray2.70A/B/C/D/E/F/G/H/I/J/K/L/M/N1-93[»]
ProteinModelPortaliQ9Y7M4
SMRiQ9Y7M4
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi276745, 7 interactors
IntActiQ9Y7M4, 1 interactor
STRINGi4896.SPBC9B6.05c.1

PTM databases

iPTMnetiQ9Y7M4

Proteomic databases

MaxQBiQ9Y7M4
PaxDbiQ9Y7M4
PRIDEiQ9Y7M4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC9B6.05c.1; SPBC9B6.05c.1:pep; SPBC9B6.05c
GeneIDi2540212
KEGGispo:SPBC9B6.05c

Organism-specific databases

EuPathDBiFungiDB:SPBC9B6.05c
PomBaseiSPBC9B6.05c lsm3

Phylogenomic databases

HOGENOMiHOG000223550
InParanoidiQ9Y7M4
KOiK12622
OMAiGHMNLIL
OrthoDBiEOG092C5VL3
PhylomeDBiQ9Y7M4

Enzyme and pathway databases

ReactomeiR-SPO-430039 mRNA decay by 5' to 3' exoribonuclease

Miscellaneous databases

PROiPR:Q9Y7M4

Family and domain databases

CDDicd01730 LSm3, 1 hit
InterProiView protein in InterPro
IPR034105 Lsm3
IPR001163 LSM_dom_euk/arc
IPR010920 LSM_dom_sf
IPR040002 Sm-like_LSM3
PANTHERiPTHR13110 PTHR13110, 1 hit
PfamiView protein in Pfam
PF01423 LSM, 1 hit
SMARTiView protein in SMART
SM00651 Sm, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiLSM3_SCHPO
AccessioniPrimary (citable) accession number: Q9Y7M4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: November 7, 2018
This is version 128 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again