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Protein

ADP-ribosylation factor-like protein 2-binding protein

Gene

ARL2BP

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. May play a role as an effector of ARL2.1 Publication

GO - Molecular functioni

  • GTPase regulator activity Source: ProtInc
  • transcription coactivator activity Source: UniProtKB

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-HSA-422356 Regulation of insulin secretion

Names & Taxonomyi

Protein namesi
Recommended name:
ADP-ribosylation factor-like protein 2-binding protein
Short name:
ARF-like 2-binding protein
Short name:
ARL2-binding protein
Alternative name(s):
Binder of ARF2 protein 1
Gene namesi
Name:ARL2BP
Synonyms:BART, BART1
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 16

Organism-specific databases

EuPathDBiHostDB:ENSG00000102931.7
HGNCiHGNC:17146 ARL2BP
MIMi615407 gene
neXtProtiNX_Q9Y2Y0

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell projection, Cilium, Cytoplasm, Cytoskeleton, Mitochondrion, Nucleus

Pathology & Biotechi

Involvement in diseasei

Retinitis pigmentosa with or without situs inversus (RPSI)1 Publication
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA disorder characterized by variable association of retinitis pigmentosa with situs inversus. Retinitis pigmentosa is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. Situs inversus is a congenital abnormality in which organs in the thorax and the abdomen are opposite to their normal positions due to lateral transposition.
See also OMIM:615434
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_07022745M → R in RPSI; drastic decrease ARL2-binding, diffuse cytoplasmic localization, no enrichement at cilia basal body. 1 PublicationCorresponds to variant dbSNP:rs398123053EnsemblClinVar.1

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Mutagenesisi56E → A: Decreases interaction with ARL2. 1 Publication1
Mutagenesisi57E → A: Decreases interaction with ARL2. 1 Publication1
Mutagenesisi60L → A: Decreases interaction with ARL2. 1
Mutagenesisi74E → A: Decreases interaction with ARL2. 1 Publication1
Mutagenesisi76Y → A: Decreases interaction with ARL2. 1 Publication1
Mutagenesisi109F → A: Decreases interaction with ARL2. 1 Publication1
Mutagenesisi110D → A: Decreases interaction with ARL2. 1 Publication1
Mutagenesisi111M → A: Does not decrease interaction with ARL2. 1 Publication1
Mutagenesisi112L → A: Decreases interaction with ARL2. 1 Publication1
Mutagenesisi115F → A: Decreases interaction with ARL2. 1 Publication1

Keywords - Diseasei

Ciliopathy, Disease mutation

Organism-specific databases

DisGeNETi23568
MalaCardsiARL2BP
MIMi615434 phenotype
OpenTargetsiENSG00000102931
Orphaneti791 Retinitis pigmentosa
PharmGKBiPA134904608

Polymorphism and mutation databases

BioMutaiARL2BP
DMDMi74735245

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002871131 – 163ADP-ribosylation factor-like protein 2-binding proteinAdd BLAST163

Proteomic databases

EPDiQ9Y2Y0
PaxDbiQ9Y2Y0
PeptideAtlasiQ9Y2Y0
PRIDEiQ9Y2Y0
ProteomicsDBi85933
85934 [Q9Y2Y0-2]
TopDownProteomicsiQ9Y2Y0-1 [Q9Y2Y0-1]

PTM databases

iPTMnetiQ9Y2Y0
PhosphoSitePlusiQ9Y2Y0

Expressioni

Tissue specificityi

Expressed in retina pigment epithelial cells (at protein level). Widely expressed.2 Publications

Gene expression databases

BgeeiENSG00000102931 Expressed in 227 organ(s), highest expression level in adrenal tissue
CleanExiHS_ARL2BP
ExpressionAtlasiQ9Y2Y0 baseline and differential
GenevisibleiQ9Y2Y0 HS

Organism-specific databases

HPAiHPA043066
HPA048440

Interactioni

Subunit structurei

Found in a complex with ARL2BP, ARL2 and SLC25A6. Found in a complex with ARL2, ARL2BP and SLC25A4. Interacts with STAT2, STAT3 and STAT4. Interacts with GTP-bound ARL2 and ARL3; the complex ARL2-ARL2BP as well as ARL2BP alone, binds to ANT1. Interaction with ARL2 may be required for targeting to cilia basal body. Interacts with STAT3; interaction is enhanced with ARL2.8 Publications

Binary interactionsi

Protein-protein interaction databases

BioGridi117110, 27 interactors
DIPiDIP-48323N
IntActiQ9Y2Y0, 7 interactors
STRINGi9606.ENSP00000219204

Structurei

Secondary structure

1163
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliQ9Y2Y0
SMRiQ9Y2Y0
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9Y2Y0

Family & Domainsi

Sequence similaritiesi

Belongs to the ARL2BP family.Curated

Phylogenomic databases

eggNOGiENOG410IKTQ Eukaryota
ENOG4111IGT LUCA
GeneTreeiENSGT00390000015052
HOGENOMiHOG000024955
HOVERGENiHBG105565
InParanoidiQ9Y2Y0
KOiK16742
OMAiQQHKDEM
PhylomeDBiQ9Y2Y0
TreeFamiTF315143

Family and domain databases

InterProiView protein in InterPro
IPR038849 ARL2BP
IPR023379 BART_dom
PANTHERiPTHR15487 PTHR15487, 1 hit
PfamiView protein in Pfam
PF11527 ARL2_Bind_BART, 1 hit

Sequences (2+)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q9Y2Y0-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MDALEGESFA LSFSSASDAE FDAVVGYLED IIMDDEFQLL QRNFMDKYYL
60 70 80 90 100
EFEDTEENKL IYTPIFNEYI SLVEKYIEEQ LLQRIPEFNM AAFTTTLQHH
110 120 130 140 150
KDEVAGDIFD MLLTFTDFLA FKEMFLDYRA EKEGRGLDLS SGLVVTSLCK
160
SSSLPASQNN LRH
Length:163
Mass (Da):18,822
Last modified:November 1, 1999 - v1
Checksum:iE35EB5AC73FC1FEC
GO
Isoform 2 (identifier: Q9Y2Y0-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-11: Missing.
     12-13: SF → MR

Note: No experimental confirmation available.
Show »
Length:152
Mass (Da):17,711
Checksum:i6CC6B4C0A11D35F4
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
H3BM52H3BM52_HUMAN
ADP-ribosylation factor-like protei...
ARL2BP
171Annotation score:
H3BU49H3BU49_HUMAN
ADP-ribosylation factor-like protei...
ARL2BP
123Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti27Y → C in AAH94878 (PubMed:15489334).Curated1
Sequence conflicti50L → Q in AAH94878 (PubMed:15489334).Curated1
Sequence conflicti61I → T in AAH94878 (PubMed:15489334).Curated1
Sequence conflicti83Q → E in AAH94878 (PubMed:15489334).Curated1
Sequence conflicti87E → G in AAH94878 (PubMed:15489334).Curated1
Sequence conflicti154L → T in AAH94878 (PubMed:15489334).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_07022745M → R in RPSI; drastic decrease ARL2-binding, diffuse cytoplasmic localization, no enrichement at cilia basal body. 1 PublicationCorresponds to variant dbSNP:rs398123053EnsemblClinVar.1
Natural variantiVAR_05390487E → K. Corresponds to variant dbSNP:rs7198865EnsemblClinVar.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0253171 – 11Missing in isoform 2. 1 PublicationAdd BLAST11
Alternative sequenceiVSP_02531812 – 13SF → MR in isoform 2. 1 Publication2

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF126062 mRNA Translation: AAD20633.1
AK075050 mRNA Translation: BAG52057.1
CH471092 Genomic DNA Translation: EAW82913.1
BC003087 mRNA Translation: AAH03087.1
BC094878 mRNA Translation: AAH94878.1
CCDSiCCDS10776.1 [Q9Y2Y0-1]
RefSeqiNP_036238.1, NM_012106.3 [Q9Y2Y0-1]
UniGeneiHs.632873
Hs.719024

Genome annotation databases

EnsembliENST00000219204; ENSP00000219204; ENSG00000102931 [Q9Y2Y0-1]
GeneIDi23568
KEGGihsa:23568
UCSCiuc002elf.2 human [Q9Y2Y0-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF126062 mRNA Translation: AAD20633.1
AK075050 mRNA Translation: BAG52057.1
CH471092 Genomic DNA Translation: EAW82913.1
BC003087 mRNA Translation: AAH03087.1
BC094878 mRNA Translation: AAH94878.1
CCDSiCCDS10776.1 [Q9Y2Y0-1]
RefSeqiNP_036238.1, NM_012106.3 [Q9Y2Y0-1]
UniGeneiHs.632873
Hs.719024

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2K9ANMR-A1-136[»]
3DOEX-ray2.25B1-163[»]
3DOFX-ray3.30B1-163[»]
ProteinModelPortaliQ9Y2Y0
SMRiQ9Y2Y0
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi117110, 27 interactors
DIPiDIP-48323N
IntActiQ9Y2Y0, 7 interactors
STRINGi9606.ENSP00000219204

PTM databases

iPTMnetiQ9Y2Y0
PhosphoSitePlusiQ9Y2Y0

Polymorphism and mutation databases

BioMutaiARL2BP
DMDMi74735245

Proteomic databases

EPDiQ9Y2Y0
PaxDbiQ9Y2Y0
PeptideAtlasiQ9Y2Y0
PRIDEiQ9Y2Y0
ProteomicsDBi85933
85934 [Q9Y2Y0-2]
TopDownProteomicsiQ9Y2Y0-1 [Q9Y2Y0-1]

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000219204; ENSP00000219204; ENSG00000102931 [Q9Y2Y0-1]
GeneIDi23568
KEGGihsa:23568
UCSCiuc002elf.2 human [Q9Y2Y0-1]

Organism-specific databases

CTDi23568
DisGeNETi23568
EuPathDBiHostDB:ENSG00000102931.7
GeneCardsiARL2BP
HGNCiHGNC:17146 ARL2BP
HPAiHPA043066
HPA048440
MalaCardsiARL2BP
MIMi615407 gene
615434 phenotype
neXtProtiNX_Q9Y2Y0
OpenTargetsiENSG00000102931
Orphaneti791 Retinitis pigmentosa
PharmGKBiPA134904608
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IKTQ Eukaryota
ENOG4111IGT LUCA
GeneTreeiENSGT00390000015052
HOGENOMiHOG000024955
HOVERGENiHBG105565
InParanoidiQ9Y2Y0
KOiK16742
OMAiQQHKDEM
PhylomeDBiQ9Y2Y0
TreeFamiTF315143

Enzyme and pathway databases

ReactomeiR-HSA-422356 Regulation of insulin secretion

Miscellaneous databases

ChiTaRSiARL2BP human
EvolutionaryTraceiQ9Y2Y0
GenomeRNAii23568
PROiPR:Q9Y2Y0
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000102931 Expressed in 227 organ(s), highest expression level in adrenal tissue
CleanExiHS_ARL2BP
ExpressionAtlasiQ9Y2Y0 baseline and differential
GenevisibleiQ9Y2Y0 HS

Family and domain databases

InterProiView protein in InterPro
IPR038849 ARL2BP
IPR023379 BART_dom
PANTHERiPTHR15487 PTHR15487, 1 hit
PfamiView protein in Pfam
PF11527 ARL2_Bind_BART, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiAR2BP_HUMAN
AccessioniPrimary (citable) accession number: Q9Y2Y0
Secondary accession number(s): B3KQJ5, Q504R0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: November 1, 1999
Last modified: September 12, 2018
This is version 133 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  2. SIMILARITY comments
    Index of protein domains and families
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. Human chromosome 16
    Human chromosome 16: entries, gene names and cross-references to MIM
  5. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  6. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
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