UniProtKB - Q9XTR1 (CDK4_CAEEL)
Protein
Cyclin-dependent kinase 4 homolog
Gene
cdk-4
Organism
Caenorhabditis elegans
Status
Functioni
Serine/threonine-protein kinase which, in association with cyclin D-like protein cyd-1, is required for the progression through the G1 phase of the cell cycle during postembryonic development by phosphorylating and inhibiting lin-35 and fzr-1 (PubMed:10518501, PubMed:11684669, PubMed:25562820). In complex with cyd-1, involved in sex determination during gonadogenesis by regulating the asymmetric division of the somatic gonadal precursor cell (SGP) (PubMed:16198291).4 Publications
Catalytic activityi
Cofactori
Mg2+By similarity
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Binding sitei | 131 | ATPPROSITE-ProRule annotation | 1 | |
Active sitei | 233 | Proton acceptorPROSITE-ProRule annotation | 1 | |
Metal bindingi | 238 | MagnesiumBy similarity | 1 | |
Metal bindingi | 251 | MagnesiumBy similarity | 1 |
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Nucleotide bindingi | 108 – 116 | ATPPROSITE-ProRule annotation | 9 |
GO - Molecular functioni
- ATP binding Source: UniProtKB-KW
- cyclin-dependent protein serine/threonine kinase activity Source: GO_Central
- metal ion binding Source: UniProtKB-KW
- protein serine/threonine kinase activity Source: WormBase
- protein serine kinase activity Source: RHEA
- protein threonine kinase activity Source: RHEA
- RNA polymerase II CTD heptapeptide repeat kinase activity Source: GO_Central
GO - Biological processi
- cell cycle G1/S phase transition Source: UniProtKB
- cell division Source: UniProtKB-KW
- hermaphrodite genitalia development Source: UniProtKB
- male gonad development Source: UniProtKB
- nematode larval development Source: UniProtKB
- peptidyl-serine phosphorylation Source: WormBase
- peptidyl-threonine phosphorylation Source: WormBase
- positive regulation of brood size Source: UniProtKB
- positive regulation of DNA endoreduplication Source: UniProtKB
- positive regulation of G1/S transition of mitotic cell cycle Source: WormBase
- post-embryonic development Source: WormBase
- protein phosphorylation Source: WormBase
- regulation of cell cycle Source: GO_Central
- sex determination Source: UniProtKB
Keywordsi
Molecular function | Kinase, Serine/threonine-protein kinase, Transferase |
Biological process | Cell cycle, Cell division |
Ligand | ATP-binding, Magnesium, Metal-binding, Nucleotide-binding |
Enzyme and pathway databases
Reactomei | R-CEL-187577, SCF(Skp2)-mediated degradation of p27/p21 R-CEL-3214858, RMTs methylate histone arginines R-CEL-69231, Cyclin D associated events in G1 R-CEL-75815, Ubiquitin-dependent degradation of Cyclin D R-CEL-8849470, PTK6 Regulates Cell Cycle R-CEL-8878166, Transcriptional regulation by RUNX2 R-CEL-8934593, Regulation of RUNX1 Expression and Activity R-CEL-9616222, Transcriptional regulation of granulopoiesis |
SignaLinki | Q9XTR1 |
Names & Taxonomyi
Protein namesi | Recommended name: Cyclin-dependent kinase 4 homologCurated (EC:2.7.11.221 Publication)Short name: CDK4/61 Publication Alternative name(s): Cell division protein kinase 4Curated |
Gene namesi | Name:cdk-4Imported ORF Names:F18H3.5Imported |
Organismi | Caenorhabditis elegansImported |
Taxonomic identifieri | 6239 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditina › Rhabditomorpha › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis |
Proteomesi |
|
Organism-specific databases
WormBasei | F18H3.5a ; CE18608 ; WBGene00000406 ; cdk-4 F18H3.5b ; CE28918 ; WBGene00000406 ; cdk-4 |
Pathology & Biotechi
Disruption phenotypei
Arrested cell division in the G1 phase during larval development (PubMed:25562820). RNAi-mediated knockdown results in L4 stage arrest which is associated with uncoordinated movements and a protruding vulva (PubMed:10518501). Impaired cell division of P blast cells, somatic gonad precursors Z1 and Z4 and intestinal cells (PubMed:10518501). Severe defect in the proliferation of P blast cells, intestinal cells, vulva cell precursors and somatic gonad precursors (PubMed:10518501). Mesoblast M cell division is normal (PubMed:10518501). Double knockout with lin-35 rescues the cell cycle progression defect in the single cdk-4 mutants (PubMed:11684669, PubMed:25562820).3 Publications
Mutagenesis
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Mutagenesisi | 149 | E → K in he110; lack of postembryonic blast cell division. 1 Publication | 1 | |
Mutagenesisi | 191 | D → N: Loss of activity. Arrest at an early larval stage associated with a lack of cell division in several postembryonic blast cells. 1 Publication | 1 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000433388 | 1 – 406 | Cyclin-dependent kinase 4 homologCuratedAdd BLAST | 406 |
Proteomic databases
PaxDbi | Q9XTR1 |
PeptideAtlasi | Q9XTR1 |
Expressioni
Developmental stagei
Expression initiates during mid-embryogenesis primarily in post-proliferative hypodermal cells and neurons in the head, ventral cord and tail, then declines until hatching where it is mainly seen in seam cells. Expressed throughout larval development in several blast cell linages. In the P lineage, expression is restricted to proliferating cells, whereas it persists in somatic gonads and seam cells. Expressed in uterus and intestine and to a lesser extent in spermatheca.1 Publication
Gene expression databases
Bgeei | WBGene00000406, Expressed in multi-cellular organism and 5 other tissues |
Interactioni
Subunit structurei
Interacts with cyd-1; the interaction is likely involved in regulating cdk-4 activity.
1 PublicationBinary interactionsi
Q9XTR1
With | #Exp. | IntAct |
---|---|---|
cyd-1 [Q9U2M5] | 2 | EBI-14063019,EBI-2420074 |
Protein-protein interaction databases
ComplexPortali | CPX-1126, Cyclin cyd-1-cdk4 complex |
IntActi | Q9XTR1, 1 interactor |
STRINGi | 6239.F18H3.5b |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 102 – 388 | Protein kinasePROSITE-ProRule annotationAdd BLAST | 287 |
Sequence similaritiesi
Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.Curated
Phylogenomic databases
eggNOGi | KOG0594, Eukaryota |
GeneTreei | ENSGT00940000167918 |
InParanoidi | Q9XTR1 |
OMAi | KRISAYG |
OrthoDBi | 988547at2759 |
PhylomeDBi | Q9XTR1 |
Family and domain databases
InterProi | View protein in InterPro IPR011009, Kinase-like_dom_sf IPR000719, Prot_kinase_dom IPR017441, Protein_kinase_ATP_BS IPR008271, Ser/Thr_kinase_AS |
Pfami | View protein in Pfam PF00069, Pkinase, 1 hit |
SMARTi | View protein in SMART SM00220, S_TKc, 1 hit |
SUPFAMi | SSF56112, SSF56112, 1 hit |
PROSITEi | View protein in PROSITE PS00107, PROTEIN_KINASE_ATP, 1 hit PS50011, PROTEIN_KINASE_DOM, 1 hit PS00108, PROTEIN_KINASE_ST, 1 hit |
s (2)i Sequence
Sequence statusi: Complete.
This entry describes 2 produced by isoformsialternative splicing. AlignAdd to basketIsoform bImported (identifier: Q9XTR1-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MTIRHILAIR KKSLELPSDL KTFLRVLANC QHLKKNKKCR RTIFSVDFQN
60 70 80 90 100
NQRQKPSNFH FWTVIKKFSK KILKSFIIKF GNNGTIAVVF SIFPTGATPS
110 120 130 140 150
LTFLFQALGK GAYGNVYRVR SLHDGKDYAL KQIMISSKNE GIPQSVLREI
160 170 180 190 200
TVMKHLARKA HPNIISLKSV FHQLDPVRAI LKINMIMERC DWDLHTFLRN
210 220 230 240 250
IPRGVPEQQA KHVTAQIVRA LDFLHTHSII HRDLKPQNIL LNRDQTVKLA
260 270 280 290 300
DFGLSKEYSN TTAFTTLVVT LWYRSPEVLL QSYYNSTVDM WALGCIVSEI
310 320 330 340 350
YCRQPLFVGQ NEAEQLTDIF KKMGTPVGKD WPSESVIARD SFPQYRPTNL
360 370 380 390 400
KDLSPQMSKQ AIEFVQQCLR YDHSKRLSAR GALSHPFLKP AVATKSRVLK
QINFNK
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_057762 | 1 – 105 | MTIRH…LTFLF → MCENLYGEEYKMEILRLQKM MNNMTCGQMAKPLTMKDFQI H in isoform a. CuratedAdd BLAST | 105 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF083878 mRNA Translation: AAD48898.1 BX284606, Z99773 Genomic DNA Translation: CAA90447.1 BX284606 Genomic DNA Translation: CAB16923.2 |
PIRi | T21098 T23050 |
RefSeqi | NP_001024591.1, NM_001029420.1 NP_510256.1, NM_077855.4 [Q9XTR1-2] |
Genome annotation databases
EnsemblMetazoai | F18H3.5a.1; F18H3.5a.1; WBGene00000406 [Q9XTR1-2] F18H3.5b.1; F18H3.5b.1; WBGene00000406 [Q9XTR1-1] |
GeneIDi | 181472 |
KEGGi | cel:CELE_F18H3.5 |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF083878 mRNA Translation: AAD48898.1 BX284606, Z99773 Genomic DNA Translation: CAA90447.1 BX284606 Genomic DNA Translation: CAB16923.2 |
PIRi | T21098 T23050 |
RefSeqi | NP_001024591.1, NM_001029420.1 NP_510256.1, NM_077855.4 [Q9XTR1-2] |
3D structure databases
SMRi | Q9XTR1 |
ModBasei | Search... |
Protein-protein interaction databases
ComplexPortali | CPX-1126, Cyclin cyd-1-cdk4 complex |
IntActi | Q9XTR1, 1 interactor |
STRINGi | 6239.F18H3.5b |
Proteomic databases
PaxDbi | Q9XTR1 |
PeptideAtlasi | Q9XTR1 |
Genome annotation databases
EnsemblMetazoai | F18H3.5a.1; F18H3.5a.1; WBGene00000406 [Q9XTR1-2] F18H3.5b.1; F18H3.5b.1; WBGene00000406 [Q9XTR1-1] |
GeneIDi | 181472 |
KEGGi | cel:CELE_F18H3.5 |
Organism-specific databases
CTDi | 181472 |
WormBasei | F18H3.5a ; CE18608 ; WBGene00000406 ; cdk-4 F18H3.5b ; CE28918 ; WBGene00000406 ; cdk-4 |
Phylogenomic databases
eggNOGi | KOG0594, Eukaryota |
GeneTreei | ENSGT00940000167918 |
InParanoidi | Q9XTR1 |
OMAi | KRISAYG |
OrthoDBi | 988547at2759 |
PhylomeDBi | Q9XTR1 |
Enzyme and pathway databases
Reactomei | R-CEL-187577, SCF(Skp2)-mediated degradation of p27/p21 R-CEL-3214858, RMTs methylate histone arginines R-CEL-69231, Cyclin D associated events in G1 R-CEL-75815, Ubiquitin-dependent degradation of Cyclin D R-CEL-8849470, PTK6 Regulates Cell Cycle R-CEL-8878166, Transcriptional regulation by RUNX2 R-CEL-8934593, Regulation of RUNX1 Expression and Activity R-CEL-9616222, Transcriptional regulation of granulopoiesis |
SignaLinki | Q9XTR1 |
Miscellaneous databases
PROi | PR:Q9XTR1 |
Gene expression databases
Bgeei | WBGene00000406, Expressed in multi-cellular organism and 5 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR011009, Kinase-like_dom_sf IPR000719, Prot_kinase_dom IPR017441, Protein_kinase_ATP_BS IPR008271, Ser/Thr_kinase_AS |
Pfami | View protein in Pfam PF00069, Pkinase, 1 hit |
SMARTi | View protein in SMART SM00220, S_TKc, 1 hit |
SUPFAMi | SSF56112, SSF56112, 1 hit |
PROSITEi | View protein in PROSITE PS00107, PROTEIN_KINASE_ATP, 1 hit PS50011, PROTEIN_KINASE_DOM, 1 hit PS00108, PROTEIN_KINASE_ST, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | CDK4_CAEEL | |
Accessioni | Q9XTR1Primary (citable) accession number: Q9XTR1 Secondary accession number(s): G5EFI3 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | June 24, 2015 |
Last sequence update: | December 1, 2001 | |
Last modified: | April 7, 2021 | |
This is version 165 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Caenorhabditis annotation project |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Caenorhabditis elegans
Caenorhabditis elegans: entries, gene names and cross-references to WormBase - SIMILARITY comments
Index of protein domains and families