UniProtKB - Q9XIC8 (Q9XIC8_ARATH)
Protein
Submitted name:
F23M19.10
Gene
At1g34220
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Names & Taxonomyi
Protein namesi | Submitted name: F23M19.10ImportedSubmitted name: Regulator of Vps4 activity in the MVB pathway proteinImported |
Gene namesi | Ordered Locus Names:At1g34220Imported ORF Names:F23M19.10Imported, F23M19_10Imported |
Organismi | Arabidopsis thaliana (Mouse-ear cress)Imported |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT1G34220 |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 198 – 240 | DisorderedSequence analysisAdd BLAST | 43 | |
Regioni | 256 – 357 | DisorderedSequence analysisAdd BLAST | 102 | |
Regioni | 390 – 619 | DisorderedSequence analysisAdd BLAST | 230 |
Coiled coil
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Coiled coili | 32 – 59 | Sequence analysisAdd BLAST | 28 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 216 – 231 | PolarSequence analysisAdd BLAST | 16 | |
Compositional biasi | 272 – 304 | PolyampholyteSequence analysisAdd BLAST | 33 | |
Compositional biasi | 306 – 320 | PolarSequence analysisAdd BLAST | 15 | |
Compositional biasi | 390 – 479 | PolarSequence analysisAdd BLAST | 90 | |
Compositional biasi | 489 – 529 | PolarSequence analysisAdd BLAST | 41 | |
Compositional biasi | 540 – 554 | PolarSequence analysisAdd BLAST | 15 | |
Compositional biasi | 567 – 581 | PolyampholyteSequence analysisAdd BLAST | 15 | |
Compositional biasi | 591 – 612 | PolarSequence analysisAdd BLAST | 22 |
Sequence similaritiesi
Belongs to the IST1 family.ARBA annotation
Keywords - Domaini
Coiled coilSequence analysisPhylogenomic databases
HOGENOMi | CLU_025967_0_0_1 |
OMAi | RFDHQNS |
Family and domain databases
Gene3Di | 1.20.1260.60, 1 hit |
InterProi | View protein in InterPro IPR005061, Ist1 IPR042277, IST1-like |
PANTHERi | PTHR12161, PTHR12161, 1 hit |
Pfami | View protein in Pfam PF03398, Ist1, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
Q9XIC8-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL
60 70 80 90 100
ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
110 120 130 140 150
DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV
160 170 180 190 200
NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
210 220 230 240 250
DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN
260 270 280 290 300
VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
310 320 330 340 350
AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR
360 370 380 390 400
KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
410 420 430 440 450
PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN
460 470 480 490 500
QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
510 520 530 540 550
DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS
560 570 580 590 600
SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
610
DPSSGSHSFS DNTRPAHDS
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketF4HUX0 | F4HUX0_ARATH | Regulator of Vps4 activity in the M... | At1g34220, F23M19.10, F23M19_10 | 649 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC007454 Genomic DNA Translation: AAD39610.1 CP002684 Genomic DNA Translation: AEE31688.1 |
PIRi | E86466 |
RefSeqi | NP_973961.1, NM_202232.2 |
Genome annotation databases
EnsemblPlantsi | AT1G34220.2; AT1G34220.2; AT1G34220 |
GeneIDi | 840321 |
Gramenei | AT1G34220.2; AT1G34220.2; AT1G34220 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC007454 Genomic DNA Translation: AAD39610.1 CP002684 Genomic DNA Translation: AEE31688.1 |
PIRi | E86466 |
RefSeqi | NP_973961.1, NM_202232.2 |
3D structure databases
SMRi | Q9XIC8 |
ModBasei | Search... |
Proteomic databases
PRIDEi | Q9XIC8 |
ProteomicsDBi | 181093 |
Genome annotation databases
EnsemblPlantsi | AT1G34220.2; AT1G34220.2; AT1G34220 |
GeneIDi | 840321 |
Gramenei | AT1G34220.2; AT1G34220.2; AT1G34220 |
Organism-specific databases
Araporti | AT1G34220 |
Phylogenomic databases
HOGENOMi | CLU_025967_0_0_1 |
OMAi | RFDHQNS |
Gene expression databases
ExpressionAtlasi | Q9XIC8, baseline and differential |
Family and domain databases
Gene3Di | 1.20.1260.60, 1 hit |
InterProi | View protein in InterPro IPR005061, Ist1 IPR042277, IST1-like |
PANTHERi | PTHR12161, PTHR12161, 1 hit |
Pfami | View protein in Pfam PF03398, Ist1, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | Q9XIC8_ARATH | |
Accessioni | Q9XIC8Primary (citable) accession number: Q9XIC8 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | November 1, 1999 |
Last sequence update: | November 1, 1999 | |
Last modified: | October 7, 2020 | |
This is version 124 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |