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Entry version 138 (29 Sep 2021)
Sequence version 1 (01 Nov 1999)
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Protein

[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic

Gene

LSMT-L

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Protein-lysine methyltransferase methylating chloroplastic fructose 1,6-bisphosphate aldolases. Can also use with low efficiency gamma-tocopherol methyltransferase as substrate, but not a cytosolic aldolase. Able to interact with unmethylated Rubisco, but unlike in pea, the complex is catalytically unproductive.

1 Publication

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the 'Function' section describes biophysical and chemical properties, such as maximal absorption, kinetic parameters, pH dependence, redox potentials and temperature dependence.<p><a href='/help/biophysicochemical_properties' target='_top'>More...</a></p>Kineticsi

  1. KM=13.8 µM for fructose-bisphosphate aldolase 21 Publication
  2. KM=14.8 µM for fructose-bisphosphate aldolase 31 Publication
  3. KM=31.4 µM for gamma-tocopherol methyltransferase1 Publication
  1. Vmax=17.0 nmol/min/mg enzyme with fructose-bisphosphate aldolase 2 as substrate1 Publication
  2. Vmax=16.2 nmol/min/mg enzyme with fructose-bisphosphate aldolase 3 as substrate1 Publication
  3. Vmax=1.2 nmol/min/mg enzyme with gamma-tocopherol methyltransferase as substrate1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei217S-adenosyl-L-methioninePROSITE-ProRule annotation1
Binding sitei217Substrate; via carbonyl oxygenBy similarity1
Binding sitei221SubstrateBy similarity1
Binding sitei234Substrate; via carbonyl oxygenBy similarity1
Binding sitei249SubstrateBy similarity1
Binding sitei281SubstrateBy similarity1
Binding sitei294SubstrateBy similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionMethyltransferase, Transferase
LigandS-adenosyl-L-methionine

Enzyme and pathway databases

BRENDA Comprehensive Enzyme Information System

More...
BRENDAi
2.1.1.259, 399

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic (EC:2.1.1.259)
Alternative name(s):
Aldolases N-methyltransferase
[Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase-like
Short name:
AtLSMT-L
Short name:
LSMT-like enzyme
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:LSMT-L
Synonyms:RBCMT
Ordered Locus Names:At1g14030
ORF Names:F16A14.25, F7A19.12
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G14030

The Arabidopsis Information Resource

More...
TAIRi
locus:2014764, AT1G14030

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Chloroplast, Plastid

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

No visible phenotype.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a transit peptide.<p><a href='/help/transit' target='_top'>More...</a></p>Transit peptidei1 – 57ChloroplastSequence analysisAdd BLAST57
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000002219858 – 482[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplasticAdd BLAST425

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9XI84

PRoteomics IDEntifications database

More...
PRIDEi
Q9XI84

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
225906

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9XI84, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9XI84, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
23204, 58 interactors

Protein interaction database and analysis system

More...
IntActi
Q9XI84, 58 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT1G14030.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9XI84

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini59 – 282SETPROSITE-ProRule annotationAdd BLAST224

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni75 – 77S-adenosyl-L-methionine bindingBy similarity3
Regioni237 – 238S-adenosyl-L-methionine bindingBy similarity2

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1337, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_028149_1_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9XI84

Identification of Orthologs from Complete Genome Data

More...
OMAi
CYELYRW

Database of Orthologous Groups

More...
OrthoDBi
489371at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9XI84

Family and domain databases

Conserved Domains Database

More...
CDDi
cd19179, SET_RBCMT, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.90.1420.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011192, Rubisco_LSMT_MeTrfase_plant
IPR015353, Rubisco_LSMT_subst-bd
IPR036464, Rubisco_LSMT_subst-bd_sf
IPR001214, SET_dom
IPR044431, SET_RBCMT

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF09273, Rubis-subs-bind, 1 hit
PF00856, SET, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF009328, RMT_SET, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF81822, SSF81822, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51583, SAM_MT127, 1 hit
PS50280, SET, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9XI84-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSASVAVVSG FLRIPSIQKS QNPSFLFSRP KKSLVRPISA SSSELPENVR
60 70 80 90 100
NFWKWLRDQG VVSGKSVAEP AVVPEGLGLV ARRDIGRNEV VLEIPKRLWI
110 120 130 140 150
NPETVTASKI GPLCGGLKPW VSVALFLIRE KYEEESSWRV YLDMLPQSTD
160 170 180 190 200
STVFWSEEEL AELKGTQLLS TTLGVKEYVE NEFLKLEQEI LLPNKDLFSS
210 220 230 240 250
RITLDDFIWA FGILKSRAFS RLRGQNLVLI PLADLINHNP AIKTEDYAYE
260 270 280 290 300
IKGAGLFSRD LLFSLKSPVY VKAGEQVYIQ YDLNKSNAEL ALDYGFVESN
310 320 330 340 350
PKRNSYTLTI EIPESDPFFG DKLDIAESNK MGETGYFDIV DGQTLPAGML
360 370 380 390 400
QYLRLVALGG PDAFLLESIF NNTIWGHLEL PVSRTNEELI CRVVRDACKS
410 420 430 440 450
ALSGFDTTIE EDEKLLDKGK LEPRLEMALK IRIGEKRVLQ QIDQIFKDRE
460 470 480
LELDILEYYQ ERRLKDLGLV GEQGDIIFWE TK
Length:482
Mass (Da):54,612
Last modified:November 1, 1999 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9E93472B5B14EFC6
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAF79410 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC007576 Genomic DNA Translation: AAD39289.1
AC068197 Genomic DNA Translation: AAF79410.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29100.1
BT005791 mRNA Translation: AAO64193.1

Protein sequence database of the Protein Information Resource

More...
PIRi
F86273

NCBI Reference Sequences

More...
RefSeqi
NP_172856.1, NM_101269.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G14030.1; AT1G14030.1; AT1G14030

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
837964

Gramene; a comparative resource for plants

More...
Gramenei
AT1G14030.1; AT1G14030.1; AT1G14030

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G14030

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007576 Genomic DNA Translation: AAD39289.1
AC068197 Genomic DNA Translation: AAF79410.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29100.1
BT005791 mRNA Translation: AAO64193.1
PIRiF86273
RefSeqiNP_172856.1, NM_101269.2

3D structure databases

SMRiQ9XI84
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi23204, 58 interactors
IntActiQ9XI84, 58 interactors
STRINGi3702.AT1G14030.1

Proteomic databases

PaxDbiQ9XI84
PRIDEiQ9XI84
ProteomicsDBi225906

Genome annotation databases

EnsemblPlantsiAT1G14030.1; AT1G14030.1; AT1G14030
GeneIDi837964
GrameneiAT1G14030.1; AT1G14030.1; AT1G14030
KEGGiath:AT1G14030

Organism-specific databases

AraportiAT1G14030
TAIRilocus:2014764, AT1G14030

Phylogenomic databases

eggNOGiKOG1337, Eukaryota
HOGENOMiCLU_028149_1_0_1
InParanoidiQ9XI84
OMAiCYELYRW
OrthoDBi489371at2759
PhylomeDBiQ9XI84

Enzyme and pathway databases

BRENDAi2.1.1.259, 399

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9XI84

Gene expression databases

ExpressionAtlasiQ9XI84, baseline and differential
GenevisibleiQ9XI84, AT

Family and domain databases

CDDicd19179, SET_RBCMT, 1 hit
Gene3Di3.90.1420.10, 1 hit
InterProiView protein in InterPro
IPR011192, Rubisco_LSMT_MeTrfase_plant
IPR015353, Rubisco_LSMT_subst-bd
IPR036464, Rubisco_LSMT_subst-bd_sf
IPR001214, SET_dom
IPR044431, SET_RBCMT
PfamiView protein in Pfam
PF09273, Rubis-subs-bind, 1 hit
PF00856, SET, 1 hit
PIRSFiPIRSF009328, RMT_SET, 1 hit
SUPFAMiSSF81822, SSF81822, 1 hit
PROSITEiView protein in PROSITE
PS51583, SAM_MT127, 1 hit
PS50280, SET, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRBCMT_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9XI84
Secondary accession number(s): Q9LMF5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 24, 2001
Last sequence update: November 1, 1999
Last modified: September 29, 2021
This is version 138 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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