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Entry version 99 (16 Oct 2019)
Sequence version 2 (18 Mar 2008)
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Protein

Uncharacterized protein At1g15400

Gene

At1g15400

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Uncharacterized protein At1g15400
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At1g15400
ORF Names:F9L1.35
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT1G15400

The Arabidopsis Information Resource

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TAIRi
locus:2037738 AT1G15400

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003264641 – 148Uncharacterized protein At1g15400Add BLAST148

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei100PhosphoserineCombined sources1
Modified residuei107PhosphoserineCombined sources1

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
Q9XI29

PRoteomics IDEntifications database

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PRIDEi
Q9XI29

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

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iPTMneti
Q9XI29

SwissPalm database of S-palmitoylation events

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SwissPalmi
Q9XI29

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
Q9XI29 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
Q9XI29 AT

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG410J2PR Eukaryota
ENOG410ZGQ8 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000237561

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q9XI29

Identification of Orthologs from Complete Genome Data

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OMAi
HKEETNK

Database of Orthologous Groups

More...
OrthoDBi
1512113at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9XI29

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR031421 DUF4666

The PANTHER Classification System

More...
PANTHERi
PTHR33730 PTHR33730, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF15697 DUF4666, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q9XI29-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MEGLQRSTIS FRRQGSSGIV FDDRLIAELN KSGNNEQKDE SQRDEQPKPM
60 70 80 90 100
SESSEQVKPI DEKDKLRPIK TGGGAPGGIE RSRSNGGGAQ RHHRTTGRVS
110 120 130 140
PAVDPPSPRI SSCGCCSAFG KNPPGKKVNP RKRPPKRRSR RRIVTKKR
Note: Derived from EST data. No experimental confirmation available.
Length:148
Mass (Da):16,339
Last modified:March 18, 2008 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDC1D315AC41EE377
GO
Isoform 2 (identifier: Q9XI29-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     141-145: RRIVT → EGGGS
     146-148: Missing.

Note: Derived from EST data. No experimental confirmation available.
Show »
Length:145
Mass (Da):15,688
Checksum:iFECEA6DF18C5438D
GO
Isoform 3 (identifier: Q9XI29-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     141-148: Missing.

Show »
Length:140
Mass (Da):15,301
Checksum:i75438DEFAEBCAFB4
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_032664141 – 148Missing in isoform 3. 3 Publications8
Alternative sequenceiVSP_032662141 – 145RRIVT → EGGGS in isoform 2. Curated5
Alternative sequenceiVSP_032663146 – 148Missing in isoform 2. Curated3

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AC007591 Genomic DNA Translation: AAD39668.1
CP002684 Genomic DNA Translation: AEE29316.1
CP002684 Genomic DNA Translation: AEE29317.1
CP002684 Genomic DNA Translation: AEE29318.1
AF336927 mRNA Translation: AAG54008.1
AY085171 mRNA Translation: AAM61724.1
AK228431 mRNA Translation: BAF00363.1

Protein sequence database of the Protein Information Resource

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PIRi
F86288

NCBI Reference Sequences

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RefSeqi
NP_001077541.1, NM_001084072.1 [Q9XI29-1]
NP_563975.2, NM_101409.3 [Q9XI29-2]
NP_849670.1, NM_179339.2 [Q9XI29-3]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G15400.1; AT1G15400.1; AT1G15400 [Q9XI29-2]
AT1G15400.2; AT1G15400.2; AT1G15400 [Q9XI29-3]
AT1G15400.3; AT1G15400.3; AT1G15400 [Q9XI29-1]

Database of genes from NCBI RefSeq genomes

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GeneIDi
838110

Gramene; a comparative resource for plants

More...
Gramenei
AT1G15400.1; AT1G15400.1; AT1G15400 [Q9XI29-2]
AT1G15400.2; AT1G15400.2; AT1G15400 [Q9XI29-3]
AT1G15400.3; AT1G15400.3; AT1G15400 [Q9XI29-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT1G15400

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007591 Genomic DNA Translation: AAD39668.1
CP002684 Genomic DNA Translation: AEE29316.1
CP002684 Genomic DNA Translation: AEE29317.1
CP002684 Genomic DNA Translation: AEE29318.1
AF336927 mRNA Translation: AAG54008.1
AY085171 mRNA Translation: AAM61724.1
AK228431 mRNA Translation: BAF00363.1
PIRiF86288
RefSeqiNP_001077541.1, NM_001084072.1 [Q9XI29-1]
NP_563975.2, NM_101409.3 [Q9XI29-2]
NP_849670.1, NM_179339.2 [Q9XI29-3]

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

PTM databases

iPTMnetiQ9XI29
SwissPalmiQ9XI29

Proteomic databases

PaxDbiQ9XI29
PRIDEiQ9XI29

Genome annotation databases

EnsemblPlantsiAT1G15400.1; AT1G15400.1; AT1G15400 [Q9XI29-2]
AT1G15400.2; AT1G15400.2; AT1G15400 [Q9XI29-3]
AT1G15400.3; AT1G15400.3; AT1G15400 [Q9XI29-1]
GeneIDi838110
GrameneiAT1G15400.1; AT1G15400.1; AT1G15400 [Q9XI29-2]
AT1G15400.2; AT1G15400.2; AT1G15400 [Q9XI29-3]
AT1G15400.3; AT1G15400.3; AT1G15400 [Q9XI29-1]
KEGGiath:AT1G15400

Organism-specific databases

AraportiAT1G15400
TAIRilocus:2037738 AT1G15400

Phylogenomic databases

eggNOGiENOG410J2PR Eukaryota
ENOG410ZGQ8 LUCA
HOGENOMiHOG000237561
InParanoidiQ9XI29
OMAiHKEETNK
OrthoDBi1512113at2759
PhylomeDBiQ9XI29

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9XI29

Gene expression databases

ExpressionAtlasiQ9XI29 baseline and differential
GenevisibleiQ9XI29 AT

Family and domain databases

InterProiView protein in InterPro
IPR031421 DUF4666
PANTHERiPTHR33730 PTHR33730, 1 hit
PfamiView protein in Pfam
PF15697 DUF4666, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiY1540_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9XI29
Secondary accession number(s): A8MRG0, Q3EDC0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 18, 2008
Last sequence update: March 18, 2008
Last modified: October 16, 2019
This is version 99 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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