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Entry version 98 (02 Dec 2020)
Sequence version 1 (01 Nov 1999)
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Protein

RNA1 polyprotein

Gene
N/A
Organism
Broad bean wilt virus 2 (BBWV-2)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Thiol protease that cleaves the RNA1 and RNA2 polyproteins.

By similarity

Plays a role in RNA replication. It is covalently linked to the 5'terminus of both viral single-stranded RNA1 and RNA2 molecules.

By similarity

Down-regulates the RNA1 polyprotein processing and enhances trans-cleavage of RNA2 polyproteins. The protease cofactor and the putative helicase seem to target the replication complexes to ER membranes. Their physical association causes the membrane rearrangement of host ER that may result in formation of the small membranous vesicles that are the site of viral RNA synthesis.

By similarity

The protease cofactor and the putative helicase seem to target the replication complexes to ER membranes. Their physical association causes the membrane rearrangement of host ER that may result in formation of the small membranous vesicles that are the site of viral RNA synthesis.

By similarity

Replicates the viral genome.

By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei1003For picornain 3C-like protease activityPROSITE-ProRule annotation1
Active sitei1039For picornain 3C-like protease activityPROSITE-ProRule annotation1
Active sitei1128For picornain 3C-like protease activityPROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi515 – 522ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicase, Hydrolase, Nucleotidyltransferase, Protease, RNA-directed RNA polymerase, Thiol protease, Transferase
Biological processViral RNA replication
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
RNA1 polyprotein
Alternative name(s):
Genome polyprotein B
Cleaved into the following 5 chains:
Putative helicase (EC:3.6.4.-)
Alternative name(s):
Membrane-binding protein
NTP-binding protein
Short name:
NTB
Alternative name(s):
VPg
Picornain 3C-like protease (EC:3.4.22.-By similarity)
Short name:
3C-like protease
RNA-directed RNA polymerasePROSITE-ProRule annotation (EC:2.7.7.48PROSITE-ProRule annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBroad bean wilt virus 2 (BBWV-2)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri76875 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaOrthornaviraePisuviricotaPisoniviricetesPicornaviralesSecoviridaeComovirinaeFabavirus

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei910 – 930HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Host cytoplasm, Host endoplasmic reticulum, Host membrane, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004458571 – 1870RNA1 polyproteinAdd BLAST1870
ChainiPRO_00004458581 – 346Protease cofactorAdd BLAST346
ChainiPRO_0000445859347 – 936Putative helicaseAdd BLAST590
ChainiPRO_0000445860937 – 962Viral genome-linked proteinAdd BLAST26
ChainiPRO_0000445861963 – 1171Picornain 3C-like proteaseAdd BLAST209
ChainiPRO_00004458621172 – 1870RNA-directed RNA polymeraseAdd BLAST699

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei937O-(5'-phospho-RNA)-serineBy similarity1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Specific enzymatic cleavages by picornain 3C-like protease in vivo yield mature proteins. Picornain 3C-like protease is autocatalytically processed.By similarity
Uridylylated by the polymerase and is covalently linked to the 5'-end of genomic RNA. This uridylylated form acts as a nucleotide-peptide primer for the polymerase.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections ('Function', 'PTM / Processing', 'Pathology and Biotech') according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei346 – 347Cleavage; by viral proteaseBy similarity2
Sitei936 – 937Cleavage; by viral proteaseBy similarity2
Sitei962 – 963Cleavage; by viral proteaseBy similarity2
Sitei1171 – 1172Cleavage; by viral proteaseBy similarity2

Keywords - PTMi

Covalent protein-RNA linkage, Phosphoprotein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini486 – 654SF3 helicasePROSITE-ProRule annotationAdd BLAST169
Domaini963 – 1165Peptidase C3PROSITE-ProRule annotationAdd BLAST203
Domaini1445 – 1572RdRp catalyticPROSITE-ProRule annotationAdd BLAST128

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.40.10.10, 1 hit
3.30.70.270, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR043502, DNA/RNA_pol_sf
IPR004004, Helic/Pol/Pept_Calicivir-typ
IPR000605, Helicase_SF3_ssDNA/RNA_vir
IPR014759, Helicase_SF3_ssRNA_vir
IPR044067, PCV_3C_PRO
IPR000199, Peptidase_C3A/C3B_picornavir
IPR009003, Peptidase_S1_PA
IPR043504, Peptidase_S1_PA_chymotrypsin
IPR043128, Rev_trsase/Diguanyl_cyclase
IPR001205, RNA-dir_pol_C
IPR007094, RNA-dir_pol_PSvirus

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00548, Peptidase_C3, 1 hit
PF00680, RdRP_1, 1 hit
PF00910, RNA_helicase, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00918, CALICVIRUSNS

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50494, SSF50494, 1 hit
SSF56672, SSF56672, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51874, PCV_3C_PRO, 1 hit
PS50507, RDRP_SSRNA_POS, 1 hit
PS51218, SF3_HELICASE_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9WNW0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDFSTMQVVV GFLKTSMGLQ SIRDIVQKAK VDEKDKTLLH IHLCFFHANE
60 70 80 90 100
MARDLNEGMD VSQIHSSAAI KYRAAIVTRH VKMNVETGGY DRKRMVEYNN
110 120 130 140 150
ETCVNWFSCE FKEEKEESQE LPVDEDCVEE IVENFLENCG ISDQNDQIST
160 170 180 190 200
TSNANYAFGQ GLYEYATRVS DAIVAVISGS IKKGIDEFLD KVYAAMSQIF
210 220 230 240 250
AAWMPKIRAA FQWFENIKEV VKNWARTMHE KINCILVGME DCLYMGAGLV
260 270 280 290 300
AATCIVTLLE KFMVVTKILP APCGAATLFL TTAMATISAA YVCTKAVEKS
310 320 330 340 350
VMLTNVLHFV TTNCQIVLNA LFNHDATKKE LGANQNEGEA PTGVGQFGIS
360 370 380 390 400
TMLQDVANLM STWSTNSVTE IGRTFGAISQ IKNGILALRD MVYFVFEKLS
410 420 430 440 450
DLAHKVLGFE SQVLADLTIL LGENVADWLS ECDCMVSYML EFNSRNREIF
460 470 480 490 500
DRLSQLIEKG RLIRTGVLRT GHRGSSQVMA LVTKALEKLI ELHNSVVMSG
510 520 530 540 550
SNTTRKAPFM VFFTGASGTG KTSVVQRVAI NWLQEEQLGT NEIYSRNGQD
560 570 580 590 600
PFWSGYKRHA VVTYDDFGAV PGTTSNEAEI INVISRNPYA TVMAGLAEKG
610 620 630 640 650
MYFDSRLVLA SRNFLAANPE SGVHDSEAYE RRRHAVIRVS LKPGVPYNAD
660 670 680 690 700
DPCANQTYTL LDSKTPFREI QTFETYAELW SYLYTSFKEH EVQEELYLKS
710 720 730 740 750
LPILDSDKKE ALEGLVGLTV IATSFAPKAV MQYGMEKFPG HHFLVSDGEK
760 770 780 790 800
CYFWHGDGSV ESASVEQMQL SKQDVAQLKQ QGLSTAMMYK DLAKAFPTLN
810 820 830 840 850
SLAVLYAKNI VVKRWVGPDL EPTKTCEDVY MREQIGNLPK WQRAYLYVLS
860 870 880 890 900
KYLTTQSPRG WFMECLEETK KNLRATYLWE YKQWPLPLKL ALGSLIAIMA
910 920 930 940 950
GGAIWYSLQS LWCMSGDASF VAGAATVFSV SSFAGQSDIP NRDNSERSFR
960 970 980 990 1000
NRKVRARTWQ GQSSCFGDSA LWIAETCMAT LTFSNVRTQV CLAPGRGFFG
1010 1020 1030 1040 1050
VNHCLAAIPA GVMVKMDSSI GVTYFVWGKE KLLQFDGNEI ALYMTSTLPK
1060 1070 1080 1090 1100
TVDSLLGRIH FDVETLPKTF SAVFFSYKYD PMIQQMVPEL GSVTCKVHNK
1110 1120 1130 1140 1150
AYTLAHGEYR REIPQSLSYE ASTVAGDCGS LILAEIEGKF KLVGMHVAFN
1160 1170 1180 1190 1200
GREGSASFMP YHASLDQKVG QGDFMLKYQE WAEPKILGPG CRAMGLIDPE
1210 1220 1230 1240 1250
HALAASGKTT FVETPEEWHL DYPCDKLPSV LARGDPRLAG TVHADYDPFA
1260 1270 1280 1290 1300
SGMSKYAKEA GPFDAASLKQ VCSGIVEIWE DASADFPMDE VDLDTAINGL
1310 1320 1330 1340 1350
ENVEFFDALV LGTSEGFPYR LDRGPGDKGK SRYVSGESGS LKITDEGVLS
1360 1370 1380 1390 1400
DIAWFEEVSK TQVPDLYCIE CVKDERLPIR KVLHEPKSRL FTVLPMSYNI
1410 1420 1430 1440 1450
VIRKKFLNFV RFFMKRRDVL TAQVGINPYS REWTRMANKL LSKGNNILCC
1460 1470 1480 1490 1500
DYSRFDGFLP KCIMNEIGNM IARLMKTDEV SRTQIKNLML ACTSRYAMCN
1510 1520 1530 1540 1550
RVLYRVENGI PSGFPLTVIV NSILNEILVK YAYWHCFEDN PSVQSNFDAH
1560 1570 1580 1590 1600
VSMVVYGDDN LISVSDAISS RFDGNFLVSF MEGLGIKVTD GIDKTKVGIE
1610 1620 1630 1640 1650
FRRLENCDFL KRSFKMSPDG TWRSPMSKES LWPQLHFVKA KKLEMAEAYI
1660 1670 1680 1690 1700
NNCNNILREL WLHDVKEAEE FRNKVLRNLR WIGHEQLLNM QQLAVFHSEQ
1710 1720 1730 1740 1750
MNGVSDFLST CVTVDSIPLM DPLVPGMLPV KTSEIIPRVF VAAEKHFEGN
1760 1770 1780 1790 1800
FNDFFTISIT TSRKFEEDKG FVLLFPYGAG RGGLPTTQFM RENVIRKGCS
1810 1820 1830 1840 1850
IQKKFRQAYE KGNNILFISQ SSVVPSYVFA VMLLHSIGAI SRLSSNKALT
1860 1870
QAMQTCKRLE YLPKEYEEFF
Length:1,870
Mass (Da):210,038
Last modified:November 1, 1999 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA66967E55AC8B7AB
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF149425 Genomic RNA Translation: AAD39217.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF149425 Genomic RNA Translation: AAD39217.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

Gene3Di2.40.10.10, 1 hit
3.30.70.270, 1 hit
InterProiView protein in InterPro
IPR043502, DNA/RNA_pol_sf
IPR004004, Helic/Pol/Pept_Calicivir-typ
IPR000605, Helicase_SF3_ssDNA/RNA_vir
IPR014759, Helicase_SF3_ssRNA_vir
IPR044067, PCV_3C_PRO
IPR000199, Peptidase_C3A/C3B_picornavir
IPR009003, Peptidase_S1_PA
IPR043504, Peptidase_S1_PA_chymotrypsin
IPR043128, Rev_trsase/Diguanyl_cyclase
IPR001205, RNA-dir_pol_C
IPR007094, RNA-dir_pol_PSvirus
PfamiView protein in Pfam
PF00548, Peptidase_C3, 1 hit
PF00680, RdRP_1, 1 hit
PF00910, RNA_helicase, 1 hit
PRINTSiPR00918, CALICVIRUSNS
SUPFAMiSSF50494, SSF50494, 1 hit
SSF56672, SSF56672, 1 hit
PROSITEiView protein in PROSITE
PS51874, PCV_3C_PRO, 1 hit
PS50507, RDRP_SSRNA_POS, 1 hit
PS51218, SF3_HELICASE_2, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPOL1_BBWV2
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9WNW0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 5, 2018
Last sequence update: November 1, 1999
Last modified: December 2, 2020
This is version 98 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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