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Protein

Probable capsid and replication-associated protein

Gene

ORF1

Organism
Torque teno virus (isolate Human/Ghana/GH1/1996) (TTV)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

May self assemble to form an icosahedral capsid. Presumably essential to initiate and monitor viral genome replication by a rolling circle mechanism.

GO - Biological processi

Keywordsi

Biological processDNA replication

Names & Taxonomyi

Protein namesi
Recommended name:
Probable capsid and replication-associated protein
Gene namesi
ORF Names:ORF1
OrganismiTorque teno virus (isolate Human/Ghana/GH1/1996) (TTV)
Taxonomic identifieri487067 [NCBI]
Taxonomic lineageiVirusesssDNA virusesAnelloviridaeunclassified Anelloviridae
Virus hostiHomo sapiens (Human) [TaxID: 9606]
Proteomesi
  • UP000007550 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, T=1 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003174711 – 770Probable capsid and replication-associated proteinAdd BLAST770

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi7 – 82Arg-richAdd BLAST76

Sequence similaritiesi

Phylogenomic databases

OrthoDBiVOG0900003O

Family and domain databases

InterProiView protein in InterPro
IPR004219 TTvirus_Unk
PfamiView protein in Pfam
PF02956 TT_ORF1, 1 hit

Sequencei

Sequence statusi: Complete.

Q9WGZ0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAYGWWRRRR RRWRRWRRRP WRRRWRTRRR RPARRRGRRR NVRRRRRGGR
60 70 80 90 100
WRRRYRRWKR KGRRRKKAKI IIRQWQPNYR RRCNIVGYIP VLICGENTVS
110 120 130 140 150
RNYATHSDDT NYPGPFGGGM TTDKFTLRIL YGEYKRFMNY WTASNEDLDL
160 170 180 190 200
CRYLGVNLYF FRHPDVDFII KINTMPPFLD TELTAPSIHP GMLALDKRAR
210 220 230 240 250
WIPSLKSRPG KKHYIKIRVG APKMFTDKWY PQTDLCDMVL LTVYATAADM
260 270 280 290 300
QYPFGSPLTD SVVVNFQVLQ SMYDEKISIL PDEKIQRQNL LTSISNYIPF
310 320 330 340 350
YNTTQTIAQL KPFVDAGNAI SGTTTTTWGS LLNTTKFTTT TTTTYTYPGT
360 370 380 390 400
TNTTVTFITA NDSWYRGTVY NQNIKDVAKK AAELYSKATK AVLGNTFTTE
410 420 430 440 450
DYTLGYHGGL YSSIWLSPGR SYFETPGAYT DIKYNPFTDR GEGNMLWIDW
460 470 480 490 500
LSKKNMNYDK VQSKCLISDL PLWAAAYGYV EFCAKSTGDQ NIHMNARLLI
510 520 530 540 550
RSPFTDPQLL VHTDPTKGFV PYSLNFGNGK MPGGSSNVPI RMRAKWYPTL
560 570 580 590 600
LHQQEVLEAL AQSGPFAYHA DIKKVSLGMK YRFKWIWGGN PVRQQVVRNP
610 620 630 640 650
CKETHSSGNR VPRSLQIVDP KYNSPELTFH TWDFKRGLFG PKAIQRMQQQ
660 670 680 690 700
PTTTDIFSAG RKRPRRDTEV YHSSQEGEQK ESLLFPPVKL LRRVPPWEDS
710 720 730 740 750
QQEESGSQSS EEETQTVSQQ LKQQLQQQRI LGVKLRLLFN QVQKIQQNQD
760 770
INPTLLPRGG DLASLFQIAP
Length:770
Mass (Da):89,872
Last modified:November 1, 1999 - v1
Checksum:i1F0481A8A9344763
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF122913 Genomic DNA Translation: AAD24198.1

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF122913 Genomic DNA Translation: AAD24198.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

OrthoDBiVOG0900003O

Family and domain databases

InterProiView protein in InterPro
IPR004219 TTvirus_Unk
PfamiView protein in Pfam
PF02956 TT_ORF1, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiCAPSD_TTVVG
AccessioniPrimary (citable) accession number: Q9WGZ0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: November 1, 1999
Last modified: March 15, 2017
This is version 39 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health

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