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Protein

40S ribosomal protein S28

Gene

RpS28b

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cytoplasmic translation Source: FlyBase
  • maturation of SSU-rRNA Source: GO_Central
  • ribosomal small subunit assembly Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-DME-1799339 SRP-dependent cotranslational protein targeting to membrane
R-DME-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-DME-72649 Translation initiation complex formation
R-DME-72689 Formation of a pool of free 40S subunits
R-DME-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-DME-72702 Ribosomal scanning and start codon recognition
R-DME-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-DME-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-DME-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S28
Gene namesi
Name:RpS28b
ORF Names:CG2998
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome X

Organism-specific databases

FlyBaseiFBgn0030136 RpS28b

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001368311 – 6540S ribosomal protein S28Add BLAST65

Proteomic databases

PaxDbiQ9W334
PRIDEiQ9W334

Expressioni

Gene expression databases

BgeeiFBgn0030136
ExpressionAtlasiQ9W334 baseline and differential
GenevisibleiQ9W334 DM

Interactioni

Protein-protein interaction databases

BioGridi58339, 22 interactors
IntActiQ9W334, 9 interactors
STRINGi7227.FBpp0071295

Structurei

3D structure databases

ProteinModelPortaliQ9W334
SMRiQ9W334
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3502 Eukaryota
COG2053 LUCA
InParanoidiQ9W334
KOiK02979
OMAiMHGEASQ
OrthoDBiEOG091G19WT
PhylomeDBiQ9W334

Family and domain databases

CDDicd04457 S1_S28E, 1 hit
HAMAPiMF_00292 Ribosomal_S28e, 1 hit
InterProiView protein in InterPro
IPR012340 NA-bd_OB-fold
IPR000289 Ribosomal_S28e
IPR028626 Ribosomal_S28e_CS
PANTHERiPTHR10769 PTHR10769, 1 hit
PfamiView protein in Pfam
PF01200 Ribosomal_S28e, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD005541 Ribosomal_S28e, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
PROSITEiView protein in PROSITE
PS00961 RIBOSOMAL_S28E, 1 hit

Sequencei

Sequence statusi: Complete.

Q9W334-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDKPVVWARV MKVLGRTGSQ GQCTQVKVEF LGEQNRQIIR NVKGPVREGD
60
ILTLLESERE ARRLR
Length:65
Mass (Da):7,477
Last modified:March 1, 2001 - v2
Checksum:i4766125A66E873E1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014298 Genomic DNA Translation: AAF46503.2
AY061320 mRNA Translation: AAL28868.1
RefSeqiNP_001285059.1, NM_001298130.1
NP_572568.1, NM_132340.4
UniGeneiDm.3643

Genome annotation databases

EnsemblMetazoaiFBtr0071360; FBpp0071295; FBgn0030136
FBtr0343411; FBpp0310057; FBgn0030136
GeneIDi31897
KEGGidme:Dmel_CG2998

Similar proteinsi

Entry informationi

Entry nameiRS28_DROME
AccessioniPrimary (citable) accession number: Q9W334
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 16, 2004
Last sequence update: March 1, 2001
Last modified: July 18, 2018
This is version 120 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

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