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Entry version 145 (11 Dec 2019)
Sequence version 3 (05 Jul 2004)
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Protein

RNA polymerase II elongation factor Ell

Gene

Ell

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Elongation factor component of the super elongation complex (SEC), a complex required to increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA (PubMed:11689450). Elongation factor component of the little elongation complex (LEC), a complex required to regulate small nuclear RNA (snRNA) gene transcription by RNA polymerase II and III (PubMed:22195968, PubMed:23932780).3 Publications

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processPhotosynthesis, Transcription, Transcription regulation

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-DME-112382 Formation of RNA Pol II elongation complex
R-DME-351906 Apoptotic cleavage of cell adhesion proteins
R-DME-674695 RNA Polymerase II Pre-transcription Events
R-DME-6796648 TP53 Regulates Transcription of DNA Repair Genes
R-DME-6807505 RNA polymerase II transcribes snRNA genes
R-DME-75955 RNA Polymerase II Transcription Elongation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
RNA polymerase II elongation factor Ell
Short name:
dELL
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Ell
Synonyms:Su(Tpl)
ORF Names:CG32217
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDrosophila melanogaster (Fruit fly)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri7227 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000803 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3L

Organism-specific databases

Drosophila genome database

More...
FlyBasei
FBgn0014037 Su(Tpl)

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Chromosome, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004304261 – 1059RNA polymerase II elongation factor EllAdd BLAST1059

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9VW51

PRoteomics IDEntifications database

More...
PRIDEi
Q9VW51

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified ‘at the protein level’.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Expressed in salivary glands (at protein level).1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
FBgn0014037 Expressed in 27 organ(s), highest expression level in egg cell

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9VW51 DM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the super elongation complex (SEC), at least composed of Ell, Cdk9, cyclin-T (CycT), lilli and ear.

Component of the little elongation complex, at least composed of Ell, Eaf, Ice1 and Ice2. Associates with RNA polymerase II.

1 Publication

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
65439, 17 interactors

Protein interaction database and analysis system

More...
IntActi
Q9VW51, 2 interactors

STRING: functional protein association networks

More...
STRINGi
7227.FBpp0291257

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9VW51

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili853 – 883Sequence analysisAdd BLAST31

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi188 – 764Ser-richAdd BLAST577
Compositional biasi219 – 241Asn-richAdd BLAST23
Compositional biasi983 – 1020Gln-richAdd BLAST38
Compositional biasi1026 – 1055Asp-richAdd BLAST30

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the ELL/occludin family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4796 Eukaryota
ENOG410ZNGU LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000170989

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9VW51

KEGG Orthology (KO)

More...
KOi
K15183

Identification of Orthologs from Complete Genome Data

More...
OMAi
SHRYTDD

Database of Orthologous Groups

More...
OrthoDBi
335949at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9VW51

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.10.2670, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR042065 E3_ELL-like
IPR031176 ELL/occludin
IPR019464 ELL_N
IPR010844 Occludin_ELL
IPR036390 WH_DNA-bd_sf

The PANTHER Classification System

More...
PANTHERi
PTHR23288 PTHR23288, 3 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF10390 ELL, 1 hit
PF07303 Occludin_ELL, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46785 SSF46785, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9VW51-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTNSIASTKC LPNALSTGNY GMSQSHRYTD DSKEYIIVKL TDSAFRAIEE
60 70 80 90 100
YQRDDNAKRL QPGQRAKIQF VGNTGVIQFP RPATDANGIP NANGNGSDAT
110 120 130 140 150
GAGGGGGRKF GFTINNMEGT LECVQQQQRS LGVLGAVTLR MRIHANEDVY
160 170 180 190 200
DSTRTKMAIA EETEKSKCIR EIKPNQSDIG RKVKKPPSAI QSSASTASAF
210 220 230 240 250
SSNSSNSGLT TTAFHHHSNS NNSGNNNNRS SSSSNSFNSN NHSRKLGSSP
260 270 280 290 300
FNGLGVGSSS SSSAFASRSP NPSTLGAIGT VNGSGVVGGR YGGGAASSLA
310 320 330 340 350
STFANGISQG YHNLSGSSPR DSMTAGTSSA TASSVISSRN KMPSGGLTSS
360 370 380 390 400
NSNSSSSSRS ANSKSSGGNK MSDVSRRNIR ERLIHLLALK AFKKPELFAR
410 420 430 440 450
LKNEGIRDRE RNQITNILMD ISTMSHNTYN LRRQMWNDVD ENWPFFSEQE
460 470 480 490 500
VQQLKRRKPQ NLTPPMSSDA GSSTSGQSPT STHTGSPPPP SSNGGPGGVG
510 520 530 540 550
SGAGGTSMKR TSLEYDETMF STVQPKKQRI SHYKKDTPPS GTSYSSAGVS
560 570 580 590 600
MSLGSSGSSS RSRYTPPQRQ PGPLDDHSTT DLSYNVLDNI VEFMSSTAAA
610 620 630 640 650
TQQSMEQQQH PRSNSSNNRR GSSSLAGTSN GGNNKDKRNS TGSNSSSSSG
660 670 680 690 700
YETQQDRQRS TTPMSSNRSS ASSSTTPPKL AASFVPAATS GSASGTSKQR
710 720 730 740 750
MPPQQSDYNS YNSNNAQHVA SNSKKRMGSV GPSGGSNGQR QRSASGSNSG
760 770 780 790 800
YQQVPPPSSN SRSSIQQQNQ HQKQQVQQKQ APSQQQQQQQ QQYHQQAKHP
810 820 830 840 850
SPSQQLAAAA HAYAHATADT DSSATPRYDF SQYVPIQTLE VRRRYKTEFE
860 870 880 890 900
SDYDEYRKLL TRVEDVRNRF QDLSERLESA RRCDNGYGDY DHIKRQIVCE
910 920 930 940 950
YERINNDRTI GEDKERFDYL HAKLAHIKQL VMDYDKTLMS ATMAMAPTDV
960 970 980 990 1000
VAAQGPDPAV AKAAARLAEH HRRQHHAAET IKQQQQQKQT HQHHLQRHLQ
1010 1020 1030 1040 1050
HHLQQQQNLL QQQQNLLQQQ SVSNSDDSSD SSDSNDDDDD DDEDCDDSNS

NTDDDEARY
Length:1,059
Mass (Da):114,915
Last modified:July 5, 2004 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i07863C7ABEA17911
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti229R → S in AAL13036 (PubMed:11689450).Curated1
Sequence conflicti287V → G in AAL13036 (PubMed:11689450).Curated1
Sequence conflicti501S → G in AAL13036 (PubMed:11689450).Curated1
Sequence conflicti783S → SQ in AAL13036 (PubMed:11689450).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF416770 mRNA Translation: AAL13036.1
AE014296 Genomic DNA Translation: AAF49098.3
AE014296 Genomic DNA Translation: ACZ94748.1
AE014296 Genomic DNA Translation: AHN58147.1
BT050407 mRNA Translation: ACI88733.1
BT058015 mRNA Translation: ACM16731.1

NCBI Reference Sequences

More...
RefSeqi
NP_001163477.1, NM_001170006.2
NP_001287122.1, NM_001300193.1
NP_649155.3, NM_140898.5

Genome annotation databases

Ensembl metazoan genome annotation project

More...
EnsemblMetazoai
FBtr0074920; FBpp0074689; FBgn0014037
FBtr0302047; FBpp0291257; FBgn0014037
FBtr0344257; FBpp0310656; FBgn0014037

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
40171

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
dme:Dmel_CG32217

UCSC genome browser

More...
UCSCi
CG32217-RA d. melanogaster

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF416770 mRNA Translation: AAL13036.1
AE014296 Genomic DNA Translation: AAF49098.3
AE014296 Genomic DNA Translation: ACZ94748.1
AE014296 Genomic DNA Translation: AHN58147.1
BT050407 mRNA Translation: ACI88733.1
BT058015 mRNA Translation: ACM16731.1
RefSeqiNP_001163477.1, NM_001170006.2
NP_001287122.1, NM_001300193.1
NP_649155.3, NM_140898.5

3D structure databases

SMRiQ9VW51
ModBaseiSearch...

Protein-protein interaction databases

BioGridi65439, 17 interactors
IntActiQ9VW51, 2 interactors
STRINGi7227.FBpp0291257

Proteomic databases

PaxDbiQ9VW51
PRIDEiQ9VW51

Genome annotation databases

EnsemblMetazoaiFBtr0074920; FBpp0074689; FBgn0014037
FBtr0302047; FBpp0291257; FBgn0014037
FBtr0344257; FBpp0310656; FBgn0014037
GeneIDi40171
KEGGidme:Dmel_CG32217
UCSCiCG32217-RA d. melanogaster

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
40171
FlyBaseiFBgn0014037 Su(Tpl)

Phylogenomic databases

eggNOGiKOG4796 Eukaryota
ENOG410ZNGU LUCA
GeneTreeiENSGT00940000170989
InParanoidiQ9VW51
KOiK15183
OMAiSHRYTDD
OrthoDBi335949at2759
PhylomeDBiQ9VW51

Enzyme and pathway databases

ReactomeiR-DME-112382 Formation of RNA Pol II elongation complex
R-DME-351906 Apoptotic cleavage of cell adhesion proteins
R-DME-674695 RNA Polymerase II Pre-transcription Events
R-DME-6796648 TP53 Regulates Transcription of DNA Repair Genes
R-DME-6807505 RNA polymerase II transcribes snRNA genes
R-DME-75955 RNA Polymerase II Transcription Elongation

Miscellaneous databases

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...
GenomeRNAii
40171

Protein Ontology

More...
PROi
PR:Q9VW51

Gene expression databases

BgeeiFBgn0014037 Expressed in 27 organ(s), highest expression level in egg cell
GenevisibleiQ9VW51 DM

Family and domain databases

Gene3Di1.10.10.2670, 1 hit
InterProiView protein in InterPro
IPR042065 E3_ELL-like
IPR031176 ELL/occludin
IPR019464 ELL_N
IPR010844 Occludin_ELL
IPR036390 WH_DNA-bd_sf
PANTHERiPTHR23288 PTHR23288, 3 hits
PfamiView protein in Pfam
PF10390 ELL, 1 hit
PF07303 Occludin_ELL, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiELL_DROME
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9VW51
Secondary accession number(s): Q95VE6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 2014
Last sequence update: July 5, 2004
Last modified: December 11, 2019
This is version 145 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
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