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Protein

60S ribosomal protein L13a

Gene

RpL13A

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • chaeta morphogenesis Source: FlyBase
  • cytoplasmic translation Source: FlyBase
  • Notch signaling pathway Source: FlyBase

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-DME-1799339 SRP-dependent cotranslational protein targeting to membrane
R-DME-72689 Formation of a pool of free 40S subunits
R-DME-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-DME-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-DME-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13a
Gene namesi
Name:RpL13A
ORF Names:CG1475
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0037351 RpL13A

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337761 – 20560S ribosomal protein L13aAdd BLAST205

Proteomic databases

PaxDbiQ9VNE9
PRIDEiQ9VNE9

Expressioni

Gene expression databases

BgeeiFBgn0037351
ExpressionAtlasiQ9VNE9 baseline and differential
GenevisibleiQ9VNE9 DM

Interactioni

Protein-protein interaction databases

BioGridi65893, 27 interactors
DIPiDIP-19002N
IntActiQ9VNE9, 9 interactors
MINTiQ9VNE9
STRINGi7227.FBpp0078354

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V6Welectron microscopy6.00CO1-205[»]
ProteinModelPortaliQ9VNE9
SMRiQ9VNE9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3204 Eukaryota
COG0102 LUCA
GeneTreeiENSGT00390000010799
InParanoidiQ9VNE9
KOiK02872
OMAiKHNREMK
OrthoDBiEOG091G0PUZ
PhylomeDBiQ9VNE9

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR023563 Ribosomal_L13_CS
IPR005755 Ribosomal_L13_euk/arc
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PTHR11545:SF3 PTHR11545:SF3, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01077 L13_A_E, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

Q9VNE9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTGLTNRTVV IDGRGHLLGR LASVVAKYLL QGGKVAVVRC EELNLSGHFY
60 70 80 90 100
RNKIKFLAYL RKRCNVNPAR GPFHFRAPSR IFYKAVRGMI PHKTKRGQAA
110 120 130 140 150
LARLRVFDGI PSPYDKRRRV VVPIAMRVLT LRSDRKYCQV GRLSHEVGWH
160 170 180 190 200
YQDVIKSLER KRKAKLRVTL KHNRELKKLT VKARENIAKA AEPFNKIIKS

YGYEV
Length:205
Mass (Da):23,647
Last modified:May 1, 2000 - v1
Checksum:iCB4D1C6B97E079EE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA Translation: AAF51987.1
AY051640 mRNA Translation: AAK93064.1
RefSeqiNP_649560.1, NM_141303.3
UniGeneiDm.4531

Genome annotation databases

EnsemblMetazoaiFBtr0078705; FBpp0078354; FBgn0037351
GeneIDi40687
KEGGidme:Dmel_CG1475

Similar proteinsi

Entry informationi

Entry nameiRL13A_DROME
AccessioniPrimary (citable) accession number: Q9VNE9
Secondary accession number(s): Q9VNF0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2003
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 134 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

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