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Protein
Submitted name:

Syncrip, isoform D

Gene

Syp

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: FlyBase

GO - Biological processi

  • dorsal appendage formation Source: FlyBase
  • mRNA splicing, via spliceosome Source: FlyBase
  • negative regulation of synaptic growth at neuromuscular junction Source: FlyBase
  • oocyte dorsal/ventral axis specification Source: FlyBase
  • regulation of neuromuscular synaptic transmission Source: FlyBase
  • regulation of oskar mRNA translation Source: FlyBase

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Enzyme and pathway databases

ReactomeiR-DME-72163 mRNA Splicing - Major Pathway
R-DME-72203 Processing of Capped Intron-Containing Pre-mRNA
R-DME-75094 Formation of the Editosome

Names & Taxonomyi

Protein namesi
Submitted name:
Syncrip, isoform DImported
Gene namesi
Name:SypImported
Synonyms:AI945337Imported, anon-WO0118547.613Imported, Dmel\CG17838Imported, l(3)03806Imported, sypImported
ORF Names:CG17838Imported, Dmel_CG17838Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0038826 Syp

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiQ9VDI8

Expressioni

Gene expression databases

BgeeiFBgn0038826
ExpressionAtlasiQ9VDI8 baseline and differential
GenevisibleiQ9VDI8 DM

Interactioni

Protein-protein interaction databases

IntActiQ9VDI8, 3 interactors

Structurei

3D structure databases

ProteinModelPortaliQ9VDI8
SMRiQ9VDI8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini206 – 285RRMInterPro annotationAdd BLAST80
Domaini287 – 369RRMInterPro annotationAdd BLAST83
Domaini382 – 452RRMInterPro annotationAdd BLAST71

Phylogenomic databases

eggNOGiKOG0117 Eukaryota
ENOG410XTJ5 LUCA
GeneTreeiENSGT00550000074366
OrthoDBiEOG091G0EUB

Family and domain databases

Gene3Di3.30.70.330, 3 hits
InterProiView protein in InterPro
IPR006535 HnRNP_R/Q_splicing_fac
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 3 hits
SMARTiView protein in SMART
SM00360 RRM, 3 hits
SUPFAMiSSF54928 SSF54928, 2 hits
TIGRFAMsiTIGR01648 hnRNP-R-Q, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 3 hits

Sequencei

Sequence statusi: Complete.

Q9VDI8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSQMEASKV QKDEGGGEAL SRTILKTPSS FRTPSPIPSC SKMAEGNGEL
60 70 80 90 100
LDDINQKADD RGDGERTEDY PKLLEYGLDK KVAGKLDEIY KTGKLAHAEL
110 120 130 140 150
DERALDALKE FPVDGALNVL GQFLESNLEH VSNKSAYLCG VMKTYRQKSR
160 170 180 190 200
ASQQGVAAPA TVKGPDEDKI KKILERTGYT LDVTTGQRKY GGPPPHWEGN
210 220 230 240 250
VPGNGCEVFC GKIPKDMYED ELIPLFENCG IIWDLRLMMD PMTGTNRGYA
260 270 280 290 300
FVTFTNREAA VNAVRQLDNH EIKPGKCLKI NISVPNLRLF VGNIPKSKGK
310 320 330 340 350
DEILEEFGKL TAGLYEVIIY SSPDDKKKNR GFCFLEYESH KAASLAKRRL
360 370 380 390 400
GTGRIKVWGC DIIVDWADPQ EEPDEQTMSK VKVLYVRNLT QDVSEDKLKE
410 420 430 440 450
QFEQYGKVER VKKIKDYAFI HFEDRDSAVE AMRGLNGKEI GASNIEVSLA
460 470 480 490 500
KPPSDKKKKE EILRARERRM MQMMQARPGI VGNLSPTHPS IMSLTPMRPG
510 520 530 540 550
ARMPLRTPIP REYDYFYDFF GFSDYRQGGS FGNNVSYYDD MYRWIDGDYN
560 570 580 590 600
YYDYPNGGGG GSGGGGGSVS GGTVLPLSAG GSQNSPMASG QRSARGSASG
610 620 630 640 650
PSASPSLMGV GRGHGITVPR GRVVGQRGSI SRLGAQTVPQ AAGAAAAAGQ
660 670 680 690 700
AAAAVAQRGA TGQGAPAATG GFRGVLPTRP SARGTQHVKP LQNLPAGAAF

KTFMEGN
Length:707
Mass (Da):76,914
Last modified:October 1, 2002 - v2
Checksum:iC6D034F3AD8A6B08
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA Translation: AAF55805.2
RefSeqiNP_732556.1, NM_169926.2
UniGeneiDm.11889

Genome annotation databases

EnsemblMetazoaiFBtr0083962; FBpp0083369; FBgn0038826
GeneIDi42460
UCSCiCG17838-RD d. melanogaster

Similar proteinsi

Entry informationi

Entry nameiQ9VDI8_DROME
AccessioniPrimary (citable) accession number: Q9VDI8
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: October 1, 2002
Last modified: June 20, 2018
This is version 139 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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