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Protein
Submitted name:

Oligosaccharyl transferase, STT3 subunit

Gene

PAB2202

Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi557CalciumCombined sources1
Metal bindingi767Calcium; via carbonyl oxygenCombined sources1
Metal bindingi799Calcium; via carbonyl oxygenCombined sources1
Metal bindingi802CalciumCombined sources1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionTransferaseImported
LigandCalciumCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BRENDA Comprehensive Enzyme Information System

More...
BRENDAi
2.4.99.18 5242

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
GT66 Glycosyltransferase Family 66

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Oligosaccharyl transferase, STT3 subunitImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:PAB2202Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPyrococcus abyssi (strain GE5 / Orsay)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri272844 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000810 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000009139 Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei25 – 44HelicalSequence analysisAdd BLAST20
Transmembranei117 – 136HelicalSequence analysisAdd BLAST20
Transmembranei143 – 159HelicalSequence analysisAdd BLAST17
Transmembranei171 – 188HelicalSequence analysisAdd BLAST18
Transmembranei197 – 214HelicalSequence analysisAdd BLAST18
Transmembranei220 – 239HelicalSequence analysisAdd BLAST20
Transmembranei251 – 270HelicalSequence analysisAdd BLAST20
Transmembranei276 – 298HelicalSequence analysisAdd BLAST23
Transmembranei310 – 328HelicalSequence analysisAdd BLAST19
Transmembranei371 – 390HelicalSequence analysisAdd BLAST20
Transmembranei402 – 420HelicalSequence analysisAdd BLAST19
Transmembranei426 – 445HelicalSequence analysisAdd BLAST20
Transmembranei452 – 471HelicalSequence analysisAdd BLAST20

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
272844.PAB2202

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9V250

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
arCOG02044 Archaea
COG1287 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000073801

KEGG Orthology (KO)

More...
KOi
K07151

Identification of Orthologs from Complete Genome Data

More...
OMAi
GYWIESS

Database of Orthologous Groups

More...
OrthoDBi
POG093Z0098

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003674 Oligo_trans_STT3

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02516 STT3, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9V250-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVKTKVKEEK EEKSEKSEGK SLYPLLKRIL IPLAVIGFGI YAYYLRHLTA
60 70 80 90 100
GKYFPDPDTF YHFEIYKLVL KEGLPKYYPM AEAPFGSLIG EPLGLYILPA
110 120 130 140 150
IFYKVVSVFG YNEFQAFLMW PPFVGFLGVI AVYLLGRKVL NEWAGLWAAV
160 170 180 190 200
ILSVSTANFS RTFSGNARGD GPFMTLFLFS LVAMLYYLKE NDIKKKSLWG
210 220 230 240 250
AVFVLLASIS LGAWNGSPFG LMVLIGFASF QTIALFIFGK IKELKKFVKE
260 270 280 290 300
FYPAYLAILA IGYGLTIPGI AKIGGFIKFA FEVFLGLVLL VTIMLYGGKF
310 320 330 340 350
LNYSDKKHRF AVVAVIVLLG FAGAYAYVGP KLFRLMGGAY QSTQVYQTVQ
360 370 380 390 400
ELAKTTLSDI KLYYGVEGNN GLVFFLSIPG FLIILGLYLN ALLKKSESSN
410 420 430 440 450
EYMLSLVFYI MSLYLLSLAV RFLFLASYAI ALFSGIFAGF TMEVIEKMKE
460 470 480 490 500
NVGIKAALGI AIAVMILMVP ITHGPVIARN AKALKVSEIE TTGWEQVLKW
510 520 530 540 550
LNENTSKYAT ATSWWDYGYW IESSLLGHRR ASADGGHARD RDHILALFLA
560 570 580 590 600
RDGNVSEVDF ESWELNYFII YLNDWAKFNA ISYLGGAITR REYNGDETGR
610 620 630 640 650
GQVTTILPLQ GSGGIYVNPY AGISVRVVQS NTTSKVTVNV RGRAECSPIY
660 670 680 690 700
TLLIPGNKKI PGNGRCSDGS PFPYVLYLAP NFGLITYYKV ATSNFIKLAF
710 720 730 740 750
NIPISKYSGF TEKLYSNFVP VYGYGNVIVY EFRPFAIYRI EELINGTWKA
760 770 780 790 800
VNSLTPGKHE LKLYISAFGR DIRNATLYVY AIGNKTEKIK IGEIEYMNHL
810 820 830 840 850
NEKPIIVNVT LPKAEKYRLV LVQKGPVGVL TGPPKLNGEI ANPIRIAREG
860 870 880 890 900
EKGTLSLKVG VDKDYTADLY LRATFIYLVR KEGKSNDDYN AAFEPHMDTF
910 920 930 940 950
FITKLKGGIK LHKGDNVVTA ELNMPNGVIS SYKEKLEKEY GDKLIIRGIR
960 970
VEPVFIAEKE YVMAEVRASA PHHGSE
Length:976
Mass (Da):109,053
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD27A162C72E51A68
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AJ248283 Genomic DNA Translation: CAB49148.1
HE613800 Genomic DNA Translation: CCE69600.1

Protein sequence database of the Protein Information Resource

More...
PIRi
E75212

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CAB49148; CAB49148; PAB2202

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pab:PAB2202

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|272844.11.peg.240

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248283 Genomic DNA Translation: CAB49148.1
HE613800 Genomic DNA Translation: CCE69600.1
PIRiE75212

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3WOVX-ray3.11A476-976[»]
SMRiQ9V250
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272844.PAB2202

Protein family/group databases

CAZyiGT66 Glycosyltransferase Family 66

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB49148; CAB49148; PAB2202
KEGGipab:PAB2202
PATRICifig|272844.11.peg.240

Phylogenomic databases

eggNOGiarCOG02044 Archaea
COG1287 LUCA
HOGENOMiHOG000073801
KOiK07151
OMAiGYWIESS
OrthoDBiPOG093Z0098

Enzyme and pathway databases

BRENDAi2.4.99.18 5242

Family and domain databases

InterProiView protein in InterPro
IPR003674 Oligo_trans_STT3
PfamiView protein in Pfam
PF02516 STT3, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9V250_PYRAB
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9V250
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: December 5, 2018
This is version 94 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported
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Main funding by: National Institutes of Health

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