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Entry version 121 (11 Dec 2019)
Sequence version 1 (01 May 2000)
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Protein
Submitted name:

Rubrerythrin

Gene
N/A
Organism
Pyrococcus furiosus
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi19Iron 1Combined sources1
Metal bindingi19Iron 2Combined sources1
Metal bindingi19Iron oxide (2Fe-O) 1Combined sources1
Metal bindingi19Iron oxide (2Fe-O) 2Combined sources1
Metal bindingi19Zinc 1Combined sources1
Metal bindingi52Iron 1Combined sources1
Metal bindingi52Iron 2Combined sources1
Metal bindingi52Iron 3Combined sources1
Metal bindingi52Iron 4Combined sources1
Metal bindingi52Iron 5Combined sources1
Metal bindingi52Iron oxide (2Fe-O) 1Combined sources1
Metal bindingi52Iron oxide (2Fe-O) 2Combined sources1
Metal bindingi52Zinc 1Combined sources1
Metal bindingi52Zinc 2Combined sources1
Metal bindingi55Iron 2; via pros nitrogenCombined sources1
Metal bindingi55Iron 3; via pros nitrogenCombined sources1
Metal bindingi55Zinc 1; via pros nitrogenCombined sources1
Metal bindingi80Iron 4Combined sources1
Metal bindingi80Iron 6Combined sources1
Metal bindingi80Iron oxide (2Fe-O) 1Combined sources1
Metal bindingi80Iron oxide (2Fe-O) 3Combined sources1
Metal bindingi80Zinc 2Combined sources1
Metal bindingi83Iron 7Combined sources1
Metal bindingi83Iron oxide (2Fe-O) 1Combined sources1
Metal bindingi83Iron oxide (2Fe-O) 3Combined sources1
Metal bindingi114Iron 2Combined sources1
Metal bindingi114Iron 4Combined sources1
Metal bindingi114Iron 5Combined sources1
Metal bindingi114Iron 6Combined sources1
Metal bindingi114Iron 7Combined sources1
Metal bindingi114Iron oxide (2Fe-O) 1Combined sources1
Metal bindingi114Iron oxide (2Fe-O) 3Combined sources1
Metal bindingi114Zinc 1Combined sources1
Metal bindingi114Zinc 2Combined sources1
Metal bindingi117Iron 4; via pros nitrogenCombined sources1
Metal bindingi117Iron oxide (2Fe-O) 1; via pros nitrogenCombined sources1
Metal bindingi117Iron oxide (2Fe-O) 3; via pros nitrogenCombined sources1
Metal bindingi117Zinc 2; via pros nitrogenCombined sources1
Metal bindingi142Iron 5Combined sources1
Metal bindingi142Iron 7Combined sources1
Metal bindingi142Zinc 3Combined sources1
Metal bindingi145Iron 5Combined sources1
Metal bindingi145Iron 7Combined sources1
Metal bindingi145Zinc 3Combined sources1
Metal bindingi157Iron 5Combined sources1
Metal bindingi157Iron 7Combined sources1
Metal bindingi157Zinc 3Combined sources1
Metal bindingi160Iron 5Combined sources1
Metal bindingi160Iron 7Combined sources1
Metal bindingi160Zinc 3Combined sources1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandIronCombined sources, Metal-bindingCombined sources, ZincCombined sources

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
RubrerythrinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPyrococcus furiosusImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri2261 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
Q9UWP7

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q9UWP7

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
Q9UWP7

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini2 – 132Ferritin-like diironInterPro annotationAdd BLAST131
Domaini137 – 170Rubredoxin-likeInterPro annotationAdd BLAST34

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
arCOG01097 Archaea
COG1592 LUCA

Family and domain databases

Conserved Domains Database

More...
CDDi
cd01041 Rubrerythrin, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.20.1260.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012347 Ferritin-like
IPR009040 Ferritin-like_diiron
IPR009078 Ferritin-like_SF
IPR024934 Rubredoxin-like_dom
IPR003251 Rubrerythrin

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02915 Rubrerythrin, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF47240 SSF47240, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50905 FERRITIN_LIKE, 1 hit
PS50903 RUBREDOXIN_LIKE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9UWP7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVVKRTMTKK FLEEAFAGES MAHMRYLIFA EKAEQEGFPN IAKLFRAIAY
60 70 80 90 100
AEFVHAKNHF IALGKLGKTP ENLQMGIEGE TFEVEEMYPV YNKAAEFQGE
110 120 130 140 150
KEAVRTTHYA LEAEKIHAEL YRKAKEKAEK GEDIEIKKVY ICPICGYTAV
160 170
DEAPEYCPVC GAPKEKFVVF E
Length:171
Mass (Da):19,501
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD552312ED3CEC9BF
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF156097 Genomic DNA Translation: AAF03227.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T44569

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
41713087

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF156097 Genomic DNA Translation: AAF03227.1
PIRiT44569

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NNQX-ray2.35A/B1-171[»]
2HR5X-ray2.70A/B1-171[»]
3MPSX-ray2.00A/B/D/F/G/H/I/K2-171[»]
3PWFX-ray1.64A/B2-171[»]
3PZAX-ray1.85A/B2-171[»]
3QVDX-ray2.00A/B/C/D/E/F/G/H2-171[»]
SMRiQ9UWP7
ModBaseiSearch...
PDBe-KBiSearch...

Proteomic databases

PRIDEiQ9UWP7

Genome annotation databases

GeneIDi41713087

Phylogenomic databases

eggNOGiarCOG01097 Archaea
COG1592 LUCA

Miscellaneous databases

EvolutionaryTraceiQ9UWP7

Family and domain databases

CDDicd01041 Rubrerythrin, 1 hit
Gene3Di1.20.1260.10, 1 hit
InterProiView protein in InterPro
IPR012347 Ferritin-like
IPR009040 Ferritin-like_diiron
IPR009078 Ferritin-like_SF
IPR024934 Rubredoxin-like_dom
IPR003251 Rubrerythrin
PfamiView protein in Pfam
PF02915 Rubrerythrin, 1 hit
SUPFAMiSSF47240 SSF47240, 1 hit
PROSITEiView protein in PROSITE
PS50905 FERRITIN_LIKE, 1 hit
PS50903 RUBREDOXIN_LIKE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9UWP7_9EURY
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9UWP7
Secondary accession number(s): Q7LWZ3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: December 11, 2019
This is version 121 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources
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