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Entry version 117 (07 Apr 2021)
Sequence version 1 (01 May 2000)
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Protein

CRAL-TRIO domain-containing protein C23B6.04c

Gene

SPCC23B6.04c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
CRAL-TRIO domain-containing protein C23B6.04c
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:SPCC23B6.04c
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri284812 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002485 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome III

Organism-specific databases

Schizosaccharomyces pombe database

More...
PomBasei
SPCC23B6.04c

Eukaryotic Pathogen, Vector and Host Database Resources

More...
VEuPathDBi
FungiDB:SPCC23B6.04c

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cell membrane, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002107501 – 1008CRAL-TRIO domain-containing protein C23B6.04cAdd BLAST1008

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei525Phosphoserine1 Publication1
Modified residuei559Phosphoserine1 Publication1
Modified residuei888Phosphoserine1 Publication1
Modified residuei890Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQB - The MaxQuant DataBase

More...
MaxQBi
Q9UU99

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9UU99

PRoteomics IDEntifications database

More...
PRIDEi
Q9UU99

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q9UU99

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
275692, 2 interactors

STRING: functional protein association networks

More...
STRINGi
4896.SPCC23B6.04c.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q9UU99

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini675 – 828CRAL-TRIOPROSITE-ProRule annotationAdd BLAST154

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1470, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_298293_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9UU99

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00170, SEC14, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.525.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001251, CRAL-TRIO_dom
IPR036865, CRAL-TRIO_dom_sf
IPR011074, CRAL/TRIO_N_dom
IPR036273, CRAL/TRIO_N_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00650, CRAL_TRIO, 1 hit
PF03765, CRAL_TRIO_N, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01100, CRAL_TRIO_N, 1 hit
SM00516, SEC14, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46938, SSF46938, 1 hit
SSF52087, SSF52087, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50191, CRAL_TRIO, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9UU99-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKDSEHHHHG HNGFSKFLHK LGFGKSKGKS HKSNTSSIHE RENTAAKGPA
60 70 80 90 100
SNVRPARPNV STSSTSNEVR KSVPVGNPTV HTKTGSSSSP ASKMRNTVNL
110 120 130 140 150
QHIQAANQKT RNAEGERKVA QRRVQSDKAE ANDAAMSSSA PTVDVSEGNS
160 170 180 190 200
AAEPKITPDD SDTPRLNVDM NDKINVDEAA AKSDSKLNVD QINSTTESEK
210 220 230 240 250
RVEKVNPNIA NNPLKSPDAV AYSSETVSDE KQPTEHPVSA NVPAKSEKAV
260 270 280 290 300
CDENTKISLT NTEHYKFHSL RGDVEVVVGD LERDGRDTSL GDASVNEAAK
310 320 330 340 350
ETDVDSSRFI SDEKAVTEDA MKTEHASNAP LTDERHFQFH SSEGDIEGIV
360 370 380 390 400
GTMQRQRQSV SSYDTIVPSQ FYKQKVVQNS PPSLLSTDNK IPESGSDHPS
410 420 430 440 450
SQDNSSKASL VENSQTQSST PRKPLPTTTS PKVNPEPHSE SISDTRPSTP
460 470 480 490 500
RKVPPSTVPK MNPKLQGGNS VTAPSTPSKV LPAMSPKVAP KFQGGRSSTA
510 520 530 540 550
PSTPNKVLPA ASAKAAPKLQ EKAASFDIPN KSTIISTKST VASPIKANEN
560 570 580 590 600
SPALKSKASF EFPKELDPDG TWNAPIPYPD ANCPMAPTYR NLTSEQEEMY
610 620 630 640 650
EEVLKYCLEL KEIPVASNSS KKTDLIELER LWLTRECILR YLRATKWHVS
660 670 680 690 700
NAKKRIVDTL VWRRHFGVNN MDPDEIQEEN ATGKQVLLGY DKDGRPCLYL
710 720 730 740 750
YPARQNTKTS PLQIRHLVFS LECAIDLMPP GVETLALLIN FKSSSNRSNP
760 770 780 790 800
SVGQGKEVLN ILQTHYCERL GRALVINIPW AVWGFFKLIS PFIDPITREK
810 820 830 840 850
LKFNEPLDRY VPKDQLDSNF GGSLHFEYHH EKYWPQLVEL CKSRRLGILE
860 870 880 890 900
KWRKMGSKIG TSEWDLKGGE EYVELMQQYV RPSLTNRSSS PTVTPTVNTD
910 920 930 940 950
RQPKTLTNSA DELSPQKRRV ENPKPVVKDE GPVSIVEDEE STPVVTKKED
960 970 980 990 1000
SIPVAQSTKA DAGLDAENDL LPKSGSGVSE TPAFSHARDV STASFSDAVS

FITADSIE
Length:1,008
Mass (Da):110,725
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i3F67CD9D7962096E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CU329672 Genomic DNA Translation: CAB51563.1
AB027995 Genomic DNA Translation: BAA87299.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T41244

NCBI Reference Sequences

More...
RefSeqi
NP_588127.1, NM_001023117.2

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
SPCC23B6.04c.1; SPCC23B6.04c.1:pep; SPCC23B6.04c

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
2539120

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
spo:SPCC23B6.04c

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329672 Genomic DNA Translation: CAB51563.1
AB027995 Genomic DNA Translation: BAA87299.1
PIRiT41244
RefSeqiNP_588127.1, NM_001023117.2

3D structure databases

SMRiQ9UU99
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi275692, 2 interactors
STRINGi4896.SPCC23B6.04c.1

PTM databases

iPTMnetiQ9UU99

Proteomic databases

MaxQBiQ9UU99
PaxDbiQ9UU99
PRIDEiQ9UU99

Genome annotation databases

EnsemblFungiiSPCC23B6.04c.1; SPCC23B6.04c.1:pep; SPCC23B6.04c
GeneIDi2539120
KEGGispo:SPCC23B6.04c

Organism-specific databases

PomBaseiSPCC23B6.04c
VEuPathDBiFungiDB:SPCC23B6.04c

Phylogenomic databases

eggNOGiKOG1470, Eukaryota
HOGENOMiCLU_298293_0_0_1
InParanoidiQ9UU99

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9UU99

Family and domain databases

CDDicd00170, SEC14, 1 hit
Gene3Di3.40.525.10, 1 hit
InterProiView protein in InterPro
IPR001251, CRAL-TRIO_dom
IPR036865, CRAL-TRIO_dom_sf
IPR011074, CRAL/TRIO_N_dom
IPR036273, CRAL/TRIO_N_dom_sf
PfamiView protein in Pfam
PF00650, CRAL_TRIO, 1 hit
PF03765, CRAL_TRIO_N, 1 hit
SMARTiView protein in SMART
SM01100, CRAL_TRIO_N, 1 hit
SM00516, SEC14, 1 hit
SUPFAMiSSF46938, SSF46938, 1 hit
SSF52087, SSF52087, 1 hit
PROSITEiView protein in PROSITE
PS50191, CRAL_TRIO, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiYJX4_SCHPO
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9UU99
Secondary accession number(s): Q9UTU4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 16, 2003
Last sequence update: May 1, 2000
Last modified: April 7, 2021
This is version 117 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
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