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Entry version 141 (13 Feb 2019)
Sequence version 1 (01 May 2000)
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Protein

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6

Gene

TRMT6

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Substrate-binding subunit of tRNA (adenine-N1-)-methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA (PubMed:16043508). Together with the TRMT61A catalytic subunit, part of a mRNA N1-methyltransferase complex that mediates methylation of adenosine residues at the N1 position of a small subset of mRNAs: N1 methylation takes place in tRNA T-loop-like structures of mRNAs and is only present at low stoichiometries (PubMed:29107537, PubMed:29072297).3 Publications

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei349SubstrateCombined sources1 Publication1
Binding sitei377SubstrateCombined sources1 Publication1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processtRNA processing

Enzyme and pathway databases

BRENDA Comprehensive Enzyme Information System

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BRENDAi
2.1.1.220 2681

Reactome - a knowledgebase of biological pathways and processes

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Reactomei
R-HSA-6782315 tRNA modification in the nucleus and cytosol

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Alternative name(s):
mRNA methyladenosine-N(1)-methyltransferase non-catalytic subunit TRM61 Publication
tRNA(m1A58)-methyltransferase subunit TRM6
Short name:
tRNA(m1A58)MTase subunit TRM6
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:TRMT6
Synonyms:KIAA1153, TRM6
ORF Names:CGI-09
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 20

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...
EuPathDBi
HostDB:ENSG00000089195.14

Human Gene Nomenclature Database

More...
HGNCi
HGNC:20900 TRMT6

neXtProt; the human protein knowledge platform

More...
neXtProti
NX_Q9UJA5

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

DisGeNET

More...
DisGeNETi
51605

Open Targets

More...
OpenTargetsi
ENSG00000089195

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...
PharmGKBi
PA162407063

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...
BioMutai
TRMT6

Domain mapping of disease mutations (DMDM)

More...
DMDMi
74753354

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002330981 – 497tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6Add BLAST497

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei107PhosphothreonineCombined sources1
Modified residuei298PhosphoserineCombined sources1
Modified residuei305PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

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EPDi
Q9UJA5

jPOST - Japan Proteome Standard Repository/Database

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jPOSTi
Q9UJA5

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9UJA5

PeptideAtlas

More...
PeptideAtlasi
Q9UJA5

PRoteomics IDEntifications database

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PRIDEi
Q9UJA5

ProteomicsDB human proteome resource

More...
ProteomicsDBi
84613
84614 [Q9UJA5-2]
84615 [Q9UJA5-3]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q9UJA5

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

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PhosphoSitePlusi
Q9UJA5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in brain, liver, testis and ovary.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSG00000089195 Expressed in 205 organ(s), highest expression level in secondary oocyte

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
Q9UJA5 HS

Organism-specific databases

Human Protein Atlas

More...
HPAi
HPA047032
HPA050408

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Heterotetramer; composed of two copies of TRMT6 and two copies of TRMT61A.1 Publication1 Publication

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
119634, 54 interactors

Protein interaction database and analysis system

More...
IntActi
Q9UJA5, 15 interactors

Molecular INTeraction database

More...
MINTi
Q9UJA5

STRING: functional protein association networks

More...
STRINGi
9606.ENSP00000203001

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1497
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Select the link destinations:

Protein Data Bank Europe

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PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

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PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5CCBX-ray2.00B1-497[»]
5CCXX-ray2.10B1-497[»]
5CD1X-ray3.60B/E1-497[»]

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

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ProteinModelPortali
Q9UJA5

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q9UJA5

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni94 – 104SubstrateCombined sources1 PublicationAdd BLAST11
Regioni145 – 154SubstrateCombined sources1 Publication10
Regioni175 – 182SubstrateCombined sources1 Publication8
Regioni415 – 423SubstrateCombined sources1 Publication9
Regioni434 – 441SubstrateCombined sources1 Publication8

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the TRM6/GCD10 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1416 Eukaryota
ENOG410XSXD LUCA

Ensembl GeneTree

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GeneTreei
ENSGT00390000008327

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000232007

The HOVERGEN Database of Homologous Vertebrate Genes

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HOVERGENi
HBG061231

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q9UJA5

KEGG Orthology (KO)

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KOi
K03256

Identification of Orthologs from Complete Genome Data

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OMAi
REPGKIC

Database of Orthologous Groups

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OrthoDBi
543764at2759

Database for complete collections of gene phylogenies

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PhylomeDBi
Q9UJA5

TreeFam database of animal gene trees

More...
TreeFami
TF314835

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR017423 TRM6

The PANTHER Classification System

More...
PANTHERi
PTHR12945 PTHR12945, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04189 Gcd10p, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF038170 tRNA_m1A_mtfrase, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (4)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 4 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q9UJA5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MEGSGEQPGP QPQHPGDHRI RDGDFVVLKR EDVFKAVQVQ RRKKVTFEKQ
60 70 80 90 100
WFYLDNVIGH SYGTAFEVTS GGSLQPKKKR EEPTAETKEA GTDNRNIVDD
110 120 130 140 150
GKSQKLTQDD IKALKDKGIK GEEIVQQLIE NSTTFRDKTE FAQDKYIKKK
160 170 180 190 200
KKKYEAIITV VKPSTRILSI MYYAREPGKI NHMRYDTLAQ MLTLGNIRAG
210 220 230 240 250
NKMIVMETCA GLVLGAMMER MGGFGSIIQL YPGGGPVRAA TACFGFPKSF
260 270 280 290 300
LSGLYEFPLN KVDSLLHGTF SAKMLSSEPK DSALVEESNG TLEEKQASEQ
310 320 330 340 350
ENEDSMAEAP ESNHPEDQET METISQDPEH KGPKERGSKK DYIQEKQRRQ
360 370 380 390 400
EEQRKRHLEA AALLSERNAD GLIVASRFHP TPLLLSLLDF VAPSRPFVVY
410 420 430 440 450
CQYKEPLLEC YTKLRERGGV INLRLSETWL RNYQVLPDRS HPKLLMSGGG
460 470 480 490
GYLLSGFTVA MDNLKADTSL KSNASTLESH ETEEPAAKKR KCPESDS
Length:497
Mass (Da):55,799
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i920800D0722A6CBB
GO
Isoform 2 (identifier: Q9UJA5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     372-497: LIVASRFHPT...KKRKCPESDS → CVDGRRQETPQCMWALLQTDWHSLSPCL

Show »
Length:399
Mass (Da):44,963
Checksum:i28C0FB314555F56C
GO
Isoform 3 (identifier: Q9UJA5-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     344-365: QEKQRRQEEQRKRHLEAAALLS → SGKNRGRQGRSSGKDFWGCRFA
     366-497: Missing.

Note: No experimental confirmation available.
Show »
Length:365
Mass (Da):40,816
Checksum:i15B0559642D8D087
GO
Isoform 4 (identifier: Q9UJA5-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-170: Missing.

Show »
Length:327
Mass (Da):36,439
Checksum:iF01F65B739562EE6
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAA86467 differs from that shown. Reason: Frameshift at position 319.Curated
The sequence BAA86467 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural variantiVAR_053789293E → K. Corresponds to variant dbSNP:rs6139876Ensembl.1
Natural variantiVAR_053790299E → G2 PublicationsCorresponds to variant dbSNP:rs451571Ensembl.1
Natural variantiVAR_053791333P → L. Corresponds to variant dbSNP:rs35203742Ensembl.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0547401 – 170Missing in isoform 4. 1 PublicationAdd BLAST170
Alternative sequenceiVSP_031100344 – 365QEKQR…AALLS → SGKNRGRQGRSSGKDFWGCR FA in isoform 3. 1 PublicationAdd BLAST22
Alternative sequenceiVSP_031101366 – 497Missing in isoform 3. 1 PublicationAdd BLAST132
Alternative sequenceiVSP_018025372 – 497LIVAS…PESDS → CVDGRRQETPQCMWALLQTD WHSLSPCL in isoform 2. 1 PublicationAdd BLAST126

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AB032979 mRNA Translation: BAA86467.1 Different initiation.
AF132943 mRNA Translation: AAD27718.1 Frameshift.
AK000613 mRNA No translation available.
AK300812 mRNA Translation: BAG62468.1
AL035461 Genomic DNA No translation available.
BC001262 mRNA Translation: AAH01262.1

The Consensus CDS (CCDS) project

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CCDSi
CCDS13093.1 [Q9UJA5-1]
CCDS63225.1 [Q9UJA5-4]

NCBI Reference Sequences

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RefSeqi
NP_001268396.1, NM_001281467.1 [Q9UJA5-4]
NP_057023.2, NM_015939.4 [Q9UJA5-1]

UniGene gene-oriented nucleotide sequence clusters

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UniGenei
Hs.128791

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENST00000203001; ENSP00000203001; ENSG00000089195 [Q9UJA5-1]
ENST00000453074; ENSP00000392070; ENSG00000089195 [Q9UJA5-4]

Database of genes from NCBI RefSeq genomes

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GeneIDi
51605

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
hsa:51605

UCSC genome browser

More...
UCSCi
uc002wmh.3 human [Q9UJA5-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB032979 mRNA Translation: BAA86467.1 Different initiation.
AF132943 mRNA Translation: AAD27718.1 Frameshift.
AK000613 mRNA No translation available.
AK300812 mRNA Translation: BAG62468.1
AL035461 Genomic DNA No translation available.
BC001262 mRNA Translation: AAH01262.1
CCDSiCCDS13093.1 [Q9UJA5-1]
CCDS63225.1 [Q9UJA5-4]
RefSeqiNP_001268396.1, NM_001281467.1 [Q9UJA5-4]
NP_057023.2, NM_015939.4 [Q9UJA5-1]
UniGeneiHs.128791

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5CCBX-ray2.00B1-497[»]
5CCXX-ray2.10B1-497[»]
5CD1X-ray3.60B/E1-497[»]
ProteinModelPortaliQ9UJA5
SMRiQ9UJA5
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi119634, 54 interactors
IntActiQ9UJA5, 15 interactors
MINTiQ9UJA5
STRINGi9606.ENSP00000203001

PTM databases

iPTMnetiQ9UJA5
PhosphoSitePlusiQ9UJA5

Polymorphism and mutation databases

BioMutaiTRMT6
DMDMi74753354

Proteomic databases

EPDiQ9UJA5
jPOSTiQ9UJA5
PaxDbiQ9UJA5
PeptideAtlasiQ9UJA5
PRIDEiQ9UJA5
ProteomicsDBi84613
84614 [Q9UJA5-2]
84615 [Q9UJA5-3]

Protocols and materials databases

The DNASU plasmid repository

More...
DNASUi
51605
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000203001; ENSP00000203001; ENSG00000089195 [Q9UJA5-1]
ENST00000453074; ENSP00000392070; ENSG00000089195 [Q9UJA5-4]
GeneIDi51605
KEGGihsa:51605
UCSCiuc002wmh.3 human [Q9UJA5-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
51605
DisGeNETi51605
EuPathDBiHostDB:ENSG00000089195.14

GeneCards: human genes, protein and diseases

More...
GeneCardsi
TRMT6
HGNCiHGNC:20900 TRMT6
HPAiHPA047032
HPA050408
neXtProtiNX_Q9UJA5
OpenTargetsiENSG00000089195
PharmGKBiPA162407063

Human Unidentified Gene-Encoded large proteins database

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HUGEi
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GenAtlas: human gene database

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GenAtlasi
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Phylogenomic databases

eggNOGiKOG1416 Eukaryota
ENOG410XSXD LUCA
GeneTreeiENSGT00390000008327
HOGENOMiHOG000232007
HOVERGENiHBG061231
InParanoidiQ9UJA5
KOiK03256
OMAiREPGKIC
OrthoDBi543764at2759
PhylomeDBiQ9UJA5
TreeFamiTF314835

Enzyme and pathway databases

BRENDAi2.1.1.220 2681
ReactomeiR-HSA-6782315 tRNA modification in the nucleus and cytosol

Miscellaneous databases

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

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GenomeRNAii
51605

Protein Ontology

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PROi
PR:Q9UJA5

Gene expression databases

BgeeiENSG00000089195 Expressed in 205 organ(s), highest expression level in secondary oocyte
GenevisibleiQ9UJA5 HS

Family and domain databases

InterProiView protein in InterPro
IPR017423 TRM6
PANTHERiPTHR12945 PTHR12945, 1 hit
PfamiView protein in Pfam
PF04189 Gcd10p, 1 hit
PIRSFiPIRSF038170 tRNA_m1A_mtfrase, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTRM6_HUMAN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9UJA5
Secondary accession number(s): B4DUV6
, Q76P92, Q9BQV5, Q9ULR7, Q9Y2Z8
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 2, 2006
Last sequence update: May 1, 2000
Last modified: February 13, 2019
This is version 141 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. Human chromosome 20
    Human chromosome 20: entries, gene names and cross-references to MIM
  5. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
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