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Protein

Prenylated Rab acceptor protein 1

Gene

RABAC1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

General Rab protein regulator required for vesicle formation from the Golgi complex. May control vesicle docking and fusion by mediating the action of Rab GTPases to the SNARE complexes. In addition it inhibits the removal of Rab GTPases from the membrane by GDI.By similarity

Caution

In contrast to the mouse ortholog, it does not interact with Ras.Curated

GO - Molecular functioni

Protein family/group databases

TCDBi9.A.49.1.1 the prenylated rab acceptor protein 1 (pra1) family

Names & Taxonomyi

Protein namesi
Recommended name:
Prenylated Rab acceptor protein 1
Alternative name(s):
PRA1 family protein 1
Gene namesi
Name:RABAC1
Synonyms:PRA1, PRAF1
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 19

Organism-specific databases

EuPathDBiHostDB:ENSG00000105404.10
HGNCiHGNC:9794 RABAC1
MIMi604925 gene
neXtProtiNX_Q9UI14

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 78CytoplasmicBy similarityAdd BLAST78
Transmembranei79 – 94HelicalBy similarityAdd BLAST16
Transmembranei95 – 112HelicalBy similarityAdd BLAST18
Topological domaini113 – 131CytoplasmicBy similarityAdd BLAST19
Transmembranei132 – 148HelicalBy similarityAdd BLAST17
Transmembranei149 – 165HelicalBy similarityAdd BLAST17
Topological domaini166 – 185CytoplasmicBy similarityAdd BLAST20

Keywords - Cellular componenti

Cell junction, Cell membrane, Cytoplasm, Cytoplasmic vesicle, Golgi apparatus, Membrane, Synapse

Pathology & Biotechi

Organism-specific databases

DisGeNETi10567
OpenTargetsiENSG00000105404
PharmGKBiPA34155

Polymorphism and mutation databases

BioMutaiRABAC1
DMDMi56404978

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002208781 – 185Prenylated Rab acceptor protein 1Add BLAST185

Proteomic databases

EPDiQ9UI14
MaxQBiQ9UI14
PaxDbiQ9UI14
PeptideAtlasiQ9UI14
PRIDEiQ9UI14
ProteomicsDBi84453
TopDownProteomicsiQ9UI14

PTM databases

iPTMnetiQ9UI14
PhosphoSitePlusiQ9UI14

Expressioni

Tissue specificityi

Ubiquitous. Strongest expression found in placenta, pituitary gland, kidney, lung and stomach.1 Publication

Developmental stagei

In fetal tissues, it is more abundant in kidney and lung.1 Publication

Gene expression databases

BgeeiENSG00000105404 Expressed in 224 organ(s), highest expression level in adenohypophysis
CleanExiHS_RABAC1
ExpressionAtlasiQ9UI14 baseline and differential
GenevisibleiQ9UI14 HS

Organism-specific databases

HPAiCAB019320
HPA029171

Interactioni

Subunit structurei

Homodimer. Interacts with VAMP2 (synaptobrevin-2), GDI1, and PCLO (By similarity). Interacts specifically with prenylated Rab proteins; strongly with RAB4B, RAB5A and RAB5C, and weakly with RAB4A, RAB6, RAB7A, RAB17 and RAB22. Interacts with NDRG1.By similarity2 Publications

Binary interactionsi

GO - Molecular functioni

Protein-protein interaction databases

BioGridi115818, 77 interactors
IntActiQ9UI14, 76 interactors
MINTiQ9UI14
STRINGi9606.ENSP00000222008

Structurei

3D structure databases

ProteinModelPortaliQ9UI14
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni30 – 54Required for interaction with prenylated RAB3A and VAMP2By similarityAdd BLAST25
Regioni165 – 185Required for interaction with GDI1By similarityAdd BLAST21
Regioni175 – 185HomodimerizationBy similarityAdd BLAST11
Regioni175 – 185Required for interaction with prenylated RAB3A and VAMP2By similarityAdd BLAST11

Sequence similaritiesi

Belongs to the PRA1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3142 Eukaryota
COG5130 LUCA
GeneTreeiENSGT00390000010549
HOGENOMiHOG000230621
HOVERGENiHBG053660
InParanoidiQ9UI14
KOiK20359
OMAiFAPEPMQ
OrthoDBiEOG091G0M2S
PhylomeDBiQ9UI14
TreeFamiTF324857

Family and domain databases

InterProiView protein in InterPro
IPR004895 Prenylated_rab_accept_PRA1
PANTHERiPTHR19317 PTHR19317, 1 hit
PfamiView protein in Pfam
PF03208 PRA1, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All

Q9UI14-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAAQKDQQKD AEAEGLSGTT LLPKLIPSGA GREWLERRRA TIRPWSTFVD
60 70 80 90 100
QQRFSRPRNL GELCQRLVRN VEYYQSNYVF VFLGLILYCV VTSPMLLVAL
110 120 130 140 150
AVFFGACYIL YLRTLESKLV LFGREVSPAH QYALAGGISF PFFWLAGAGS
160 170 180
AVFWVLGATL VVIGSHAAFH QIEAVDGEEL QMEPV
Length:185
Mass (Da):20,648
Last modified:May 1, 2000 - v1
Checksum:iA85BD5BDCF6C23E4
GO

Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
M0R3D4M0R3D4_HUMAN
PRA1 family protein
RABAC1 hCG_22312
151Annotation score:
M0QXU8M0QXU8_HUMAN
PRA1 family protein
RABAC1
91Annotation score:
M0R1H9M0R1H9_HUMAN
PRA1 family protein
RABAC1
149Annotation score:
M0QXH1M0QXH1_HUMAN
PRA1 family protein
RABAC1
109Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti2Missing in AAP97229 (Ref. 3) Curated1
Sequence conflicti40 – 41AT → GP in AAP97229 (Ref. 3) Curated2
Sequence conflicti129A → E in CAB43107 (PubMed:10329441).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ133534 mRNA Translation: CAB43107.1
AF112202 mRNA Translation: AAF17190.1
AF112996 mRNA Translation: AAP97229.1
CR457214 mRNA Translation: CAG33495.1
CR542116 mRNA Translation: CAG46913.1
BT019964 mRNA Translation: AAV38767.1
BC008950 mRNA Translation: AAH08950.1
CCDSiCCDS12593.1
RefSeqiNP_006414.2, NM_006423.2
UniGeneiHs.11417

Genome annotation databases

EnsembliENST00000222008; ENSP00000222008; ENSG00000105404
GeneIDi10567
KEGGihsa:10567
UCSCiuc002osf.4 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ133534 mRNA Translation: CAB43107.1
AF112202 mRNA Translation: AAF17190.1
AF112996 mRNA Translation: AAP97229.1
CR457214 mRNA Translation: CAG33495.1
CR542116 mRNA Translation: CAG46913.1
BT019964 mRNA Translation: AAV38767.1
BC008950 mRNA Translation: AAH08950.1
CCDSiCCDS12593.1
RefSeqiNP_006414.2, NM_006423.2
UniGeneiHs.11417

3D structure databases

ProteinModelPortaliQ9UI14
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi115818, 77 interactors
IntActiQ9UI14, 76 interactors
MINTiQ9UI14
STRINGi9606.ENSP00000222008

Protein family/group databases

TCDBi9.A.49.1.1 the prenylated rab acceptor protein 1 (pra1) family

PTM databases

iPTMnetiQ9UI14
PhosphoSitePlusiQ9UI14

Polymorphism and mutation databases

BioMutaiRABAC1
DMDMi56404978

Proteomic databases

EPDiQ9UI14
MaxQBiQ9UI14
PaxDbiQ9UI14
PeptideAtlasiQ9UI14
PRIDEiQ9UI14
ProteomicsDBi84453
TopDownProteomicsiQ9UI14

Protocols and materials databases

DNASUi10567
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000222008; ENSP00000222008; ENSG00000105404
GeneIDi10567
KEGGihsa:10567
UCSCiuc002osf.4 human

Organism-specific databases

CTDi10567
DisGeNETi10567
EuPathDBiHostDB:ENSG00000105404.10
GeneCardsiRABAC1
HGNCiHGNC:9794 RABAC1
HPAiCAB019320
HPA029171
MIMi604925 gene
neXtProtiNX_Q9UI14
OpenTargetsiENSG00000105404
PharmGKBiPA34155
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG3142 Eukaryota
COG5130 LUCA
GeneTreeiENSGT00390000010549
HOGENOMiHOG000230621
HOVERGENiHBG053660
InParanoidiQ9UI14
KOiK20359
OMAiFAPEPMQ
OrthoDBiEOG091G0M2S
PhylomeDBiQ9UI14
TreeFamiTF324857

Miscellaneous databases

GeneWikiiRABAC1
GenomeRNAii10567
PROiPR:Q9UI14
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000105404 Expressed in 224 organ(s), highest expression level in adenohypophysis
CleanExiHS_RABAC1
ExpressionAtlasiQ9UI14 baseline and differential
GenevisibleiQ9UI14 HS

Family and domain databases

InterProiView protein in InterPro
IPR004895 Prenylated_rab_accept_PRA1
PANTHERiPTHR19317 PTHR19317, 1 hit
PfamiView protein in Pfam
PF03208 PRA1, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiPRAF1_HUMAN
AccessioniPrimary (citable) accession number: Q9UI14
Secondary accession number(s): Q7Z4Y2, Q9Y3R1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 7, 2004
Last sequence update: May 1, 2000
Last modified: October 10, 2018
This is version 140 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. Human chromosome 19
    Human chromosome 19: entries, gene names and cross-references to MIM
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Main funding by: National Institutes of Health

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