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Protein
Submitted name:

RNA Binding Motif protein homolog

Gene

rbm-12

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
RNA Binding Motif protein homologImported
Gene namesi
Name:rbm-12Imported
ORF Names:CELE_Y106G6D.7Imported, Y106G6D.7Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiY106G6D.7 ; CE24110 ; WBGene00013703 ; rbm-12

PTM / Processingi

Proteomic databases

EPDiQ9U304
PaxDbiQ9U304
PeptideAtlasiQ9U304

Expressioni

Gene expression databases

BgeeiWBGene00013703

Interactioni

Protein-protein interaction databases

DIPiDIP-26480N
IntActiQ9U304, 13 interactors
STRINGi6239.Y106G6D.7

Structurei

3D structure databases

ProteinModelPortaliQ9U304
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 72RRMInterPro annotationAdd BLAST69
Domaini873 – 946RRMInterPro annotationAdd BLAST74

Phylogenomic databases

eggNOGiKOG4307 Eukaryota
ENOG410ZN03 LUCA
GeneTreeiENSGT00760000119102
HOGENOMiHOG000019591
InParanoidiQ9U304
OMAiDRWIAEF
OrthoDBiEOG091G06A4

Family and domain databases

Gene3Di3.30.70.330, 2 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 2 hits
SUPFAMiSSF54928 SSF54928, 3 hits

Sequencei

Sequence statusi: Complete.

Q9U304-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVIIRLKNL PMTAGASDVR TFFTGLKIPD GAVHIIGGDE GEVFVGFSSD
60 70 80 90 100
DDARLAMTKD RLMIHGAEVR LFLSSKSEQN SVIAARKNNT YTSPVYKEYV
110 120 130 140 150
PPVPSQPTPA QEQNWNSQTA GNPYAAKAGY EASYPPQNSN ATRTSFNNQN
160 170 180 190 200
SYSNRQEISQ NHQENSVKLK DPFGGDYGGY KFQQQPPPQI NRYGSGPPPS
210 220 230 240 250
KPADLSNTRS LPPVNNPPPP HPIPQFPPEK QFGNKLGNNN DVSSRENHIQ
260 270 280 290 300
GSGNERVQGG DSWRDTSFNQ PPRNDFKGNY NNAYSSNKYK NNYKAPEFNN
310 320 330 340 350
DFNGGNKFNQ FPPRNAQSTD LSENRAAPPQ TGRKTLMPTP QAPFQNAPAP
360 370 380 390 400
FTNGPSDDVN RPFQTGPPGN LGRNGPPPFQ AGVPPPVIQN NMGRPIAPPA
410 420 430 440 450
AMVRPPPQNF PGGAGGALPV FQAPVMTPIV PPVNKPMGAA AVEKFYIELT
460 470 480 490 500
RLPTDLLRPA ALEAFIHPTA PLTLSSVKTV FGPGGIHMHT IIRLDSIADY
510 520 530 540 550
ATMMRRNGEQ GIKIQQSDKK SFDTAIDGIP IPSVSMVPSK EQRSHEDDDK
560 570 580 590 600
KSRRSRWENT SPIRSPRRSP LRRDNRDRSR SRSPPRRRRR SRSPRRREEH
610 620 630 640 650
TDPTRWCVQV TNVPFRMKDE ELLEWFSEKV RPAKLTRTFY SDGNASDRWV
660 670 680 690 700
AEFSSESLMK RSFGIRTLCT GRTLRLRYID NAKADEILKI EDVYGEGKRQ
710 720 730 740 750
MNEEARLQHE VAEKANPPSF FNAPAATRGS GPMPPLNGTA PLPSGQQNGM
760 770 780 790 800
NVPPPNGFNG APMRGGFVPR GGNNFSQSRG GMMGRGGHGG GGGPQNFYQN
810 820 830 840 850
GPNNFNNGPP EQQGQFRGNQ GNDGGFRGGF RGGYRGRGGG RGGFQGGSRG
860 870 880 890 900
DDSQPSQSEL MELIKSIGPR GTVLSCNGFP KDVTLEDVVE FFNDYEPDRN
910 920 930 940
SIRIRRGDDG VMTGECMLAC QNQENARRAS MDLDGQKLRN SVISVRII
Length:948
Mass (Da):104,274
Last modified:May 1, 2000 - v1
Checksum:i8AFEFEE5E6F5C2D7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA Translation: CAA20980.2
PIRiB87957
T26417
RefSeqiNP_492671.1, NM_060270.4
UniGeneiCel.22654

Genome annotation databases

EnsemblMetazoaiY106G6D.7; Y106G6D.7; WBGene00013703
GeneIDi172878
KEGGicel:CELE_Y106G6D.7
UCSCiY106G6D.7 c. elegans

Similar proteinsi

Entry informationi

Entry nameiQ9U304_CAEEL
AccessioniPrimary (citable) accession number: Q9U304
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 18, 2018
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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