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Protein
Submitted name:

ABC transporter, class E

Gene

abce-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi121 – 128ATPPROSITE-ProRule annotation8
Nucleotide bindingi388 – 395ATPPROSITE-ProRule annotation8

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandATP-bindingPROSITE-ProRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
ABC transporter, class EImported
Gene namesi
Name:abce-1Imported
ORF Names:CELE_Y39E4B.1Imported, Y39E4B.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiY39E4B.1 ; CE21713 ; WBGene00012714 ; abce-1

Subcellular locationi

PTM / Processingi

Proteomic databases

EPDiQ9U2K8
PaxDbiQ9U2K8
PeptideAtlasiQ9U2K8

Expressioni

Gene expression databases

BgeeiWBGene00012714

Interactioni

Protein-protein interaction databases

DIPiDIP-24572N
IntActiQ9U2K8, 3 interactors
STRINGi6239.Y39E4B.1.1

Structurei

3D structure databases

ProteinModelPortaliQ9U2K8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini18 – 434Fe-4S ferredoxin-typeInterPro annotationAdd BLAST26
Domaini57 – 864Fe-4S ferredoxin-typeInterPro annotationAdd BLAST30
Domaini81 – 326ABC transporterInterPro annotationAdd BLAST246
Domaini346 – 572ABC transporterInterPro annotationAdd BLAST227

Phylogenomic databases

eggNOGiKOG0063 Eukaryota
COG1245 LUCA
GeneTreeiENSGT00390000015089
HOGENOMiHOG000222803
InParanoidiQ9U2K8
KOiK06174
OMAiTGCNTFL
OrthoDBiEOG091G038V
PhylomeDBiQ9U2K8

Family and domain databases

CDDicd03236 ABC_RNaseL_inhibitor_domain1, 1 hit
InterProiView protein in InterPro
IPR017896 4Fe4S_Fe-S-bd
IPR017900 4Fe4S_Fe_S_CS
IPR003593 AAA+_ATPase
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR027417 P-loop_NTPase
IPR013283 RLI1
IPR034348 RLI_dom_1
IPR007209 RNaseL-inhib_metal-bd_dom
PANTHERiPTHR19248 PTHR19248, 1 hit
PfamiView protein in Pfam
PF00005 ABC_tran, 2 hits
PF00037 Fer4, 1 hit
PF04068 RLI, 1 hit
PRINTSiPR01868 ABCEFAMILY
SMARTiView protein in SMART
SM00382 AAA, 2 hits
SUPFAMiSSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS00198 4FE4S_FER_1, 1 hit
PS51379 4FE4S_FER_2, 2 hits
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 2 hits

Sequencei

Sequence statusi: Complete.

Q9U2K8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRKGPLIKN NETDVPLRIA IVEKDRCKPK NCGLACKRAC PVNRQGKQCI
60 70 80 90 100
VVEATSTISQ ISEILCIGCG ICVKKCPYDA IKIINLPANL ANETTHRYSQ
110 120 130 140 150
NSFKLHRLPT PRCGEVLGLV GTNGIGKSTA LKILAGKQKP NLGNFQKEQE
160 170 180 190 200
WTTIINHFRG SELQNYFTRI LEDTLKCVIK PQYVDQIPRA AKGTVEKNLT
210 220 230 240 250
RKHDNDNLNS VIDQMELRGL LDREIDQLSG GELQRFAIAM CCVQKADVYM
260 270 280 290 300
FDEPSSYLDV KQRLKAAAII RERVSDTNYV VVVEHDLAVL DYLSDFICCL
310 320 330 340 350
YGVPGVYGVV TLPSGVREGI NMFLEGFIRT ENMRFRESKL SFKTSEQQED
360 370 380 390 400
IKRTGNIKYP SMSKTLGNFH LDVEAGDFSD SEIIVMLGEN GTGKTTMIKM
410 420 430 440 450
MAGSLKPEDE NTELPHVSIS YKPQKISPKS ETTVRFMLHD KIQNMYEHPQ
460 470 480 490 500
FKTDVMNPLM MEQLLDRNVK ELSGGELQRV ALALCLGKTA SLYLIDEPSA
510 520 530 540 550
YLDSEQRLHA AKVIKRFIMH AKKTAFVVEH DFIMATYLAD RVVVFEGQPS
560 570 580 590 600
VKCTACKPQS LLEGMNRFLK MLDITFRRDQ ETYRPRINKL DSVKDVDQKK
610
SGQFFFLDDN
Length:610
Mass (Da):68,997
Last modified:May 1, 2000 - v1
Checksum:i4D6072AB393AD8E8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA Translation: CAB54424.1
PIRiT26761
RefSeqiNP_499717.1, NM_067316.4
UniGeneiCel.22682

Genome annotation databases

EnsemblMetazoaiY39E4B.1; Y39E4B.1; WBGene00012714
GeneIDi176733
KEGGicel:CELE_Y39E4B.1
UCSCiY39E4B.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiQ9U2K8_CAEEL
AccessioniPrimary (citable) accession number: Q9U2K8
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 18, 2018
This is version 150 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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