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Protein
Submitted name:

TIA-1/TIAL RNA binding protein homolog

Gene

tiar-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • hyperosmotic response Source: WormBase
  • nematode larval development Source: WormBase
  • reproduction Source: WormBase
  • response to heat Source: WormBase

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotationSAAS annotation

Enzyme and pathway databases

ReactomeiR-CEL-6803529 FGFR2 alternative splicing

Names & Taxonomyi

Protein namesi
Submitted name:
TIA-1/TIAL RNA binding protein homologImported
Gene namesi
Name:tiar-2Imported
ORF Names:CELE_Y46G5A.13Imported, Y46G5A.13Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiY46G5A.13 ; CE21988 ; WBGene00012904 ; tiar-2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiQ9U2F5
PaxDbiQ9U2F5
PeptideAtlasiQ9U2F5

Expressioni

Gene expression databases

BgeeiWBGene00012904

Interactioni

Protein-protein interaction databases

IntActiQ9U2F5, 1 interactor
STRINGi6239.Y46G5A.13

Structurei

3D structure databases

ProteinModelPortaliQ9U2F5
SMRiQ9U2F5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini40 – 115RRMInterPro annotationAdd BLAST76
Domaini132 – 210RRMInterPro annotationAdd BLAST79
Domaini256 – 327RRMInterPro annotationAdd BLAST72

Phylogenomic databases

eggNOGiKOG0148 Eukaryota
ENOG410XQ8U LUCA
GeneTreeiENSGT00910000144106
HOGENOMiHOG000206748
InParanoidiQ9U2F5
KOiK13201
OMAiSWGKDKT
OrthoDBiEOG091G0FH8
PhylomeDBiQ9U2F5

Family and domain databases

Gene3Di3.30.70.330, 3 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
PfamiView protein in Pfam
PF00076 RRM_1, 3 hits
SMARTiView protein in SMART
SM00360 RRM, 3 hits
SM00361 RRM_1, 3 hits
SUPFAMiSSF54928 SSF54928, 3 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 3 hits

Sequencei

Sequence statusi: Complete.

Q9U2F5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATSFYTGGG EDGDGFNPRV HARIAEREGF QLASGSEDPR TLFVANLDPA
60 70 80 90 100
ITDEFLATLF NQIGAVMKAK IIFEGLNDPY AFVEFSDHNQ ATLALQSHNG
110 120 130 140 150
RELLEKEMHV TWAFEPREPG ENRSKPETSR HFHVFVGDLC SEIDSTKLRE
160 170 180 190 200
AFVKFGEVSE AKIIRDNNTN KGKGYGFVSY PRREDAERAI DEMNGAWLGR
210 220 230 240 250
RTIRTNWATR KPDEDGERGG DRGDRRGGGG GGRDRYHNQS EKTYDEIFNQ
260 270 280 290 300
AAADNTSVYV GNIANLGEDE IRRAFDRFGP INEVRTFKIQ GYAFVKFETK
310 320 330 340 350
ESAARAIVQM NNADIGGQIV RCSWGKSGDS GKPSERGSGG GGGSGNYGYG
360 370 380 390 400
YGNSGGGGGS GGPGNSQFSN FNQRPPPSGN GGSGGGSGGQ NNQYWQYYSQ
410 420 430
YYNNPHLMQQ WNNYWQKDGP PPPPAAAASS TGGN
Length:434
Mass (Da):47,331
Last modified:May 1, 2000 - v1
Checksum:iC55C76248C660C9E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA Translation: CAB60356.1
RefSeqiNP_496718.1, NM_064317.1
UniGeneiCel.14057

Genome annotation databases

EnsemblMetazoaiY46G5A.13; Y46G5A.13; WBGene00012904
GeneIDi174909
KEGGicel:CELE_Y46G5A.13
UCSCiY46G5A.13 c. elegans

Similar proteinsi

Entry informationi

Entry nameiQ9U2F5_CAEEL
AccessioniPrimary (citable) accession number: Q9U2F5
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: March 28, 2018
This is version 127 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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