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Protein

40S ribosomal protein S27

Gene

rps-27

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+Sequence analysisNote: Binds 1 zinc ion per subunit.Sequence analysis

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri37 – 59C4-typeSequence analysisAdd BLAST23

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-CEL-72702 Ribosomal scanning and start codon recognition
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S27
Gene namesi
Name:rps-27
ORF Names:F56E10.4
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF56E10.4 ; CE19904 ; WBGene00004496 ; rps-27

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00002504092 – 8340S ribosomal protein S27Add BLAST82

Proteomic databases

EPDiQ9TXP0
PaxDbiQ9TXP0
PeptideAtlasiQ9TXP0
PRIDEiQ9TXP0

Expressioni

Gene expression databases

BgeeiWBGene00004496

Interactioni

Protein-protein interaction databases

STRINGi6239.F56E10.4.1

Structurei

3D structure databases

ProteinModelPortaliQ9TXP0
SMRiQ9TXP0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eS27 family.Sequence analysis

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri37 – 59C4-typeSequence analysisAdd BLAST23

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1779 Eukaryota
COG2051 LUCA
GeneTreeiENSGT00390000013514
HOGENOMiHOG000224977
InParanoidiQ9TXP0
KOiK02978
OMAiCASVLCQ
OrthoDBiEOG091G157G
PhylomeDBiQ9TXP0

Family and domain databases

HAMAPiMF_00371 Ribosomal_S27e, 1 hit
InterProiView protein in InterPro
IPR000592 Ribosomal_S27e
IPR011332 Ribosomal_zn-bd
PANTHERiPTHR11594 PTHR11594, 1 hit
PfamiView protein in Pfam
PF01667 Ribosomal_S27e, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD004466 Ribosomal_S27e, 1 hit
SUPFAMiSSF57829 SSF57829, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9TXP0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLAVDLLHP EPQREIRCHK LKRLVQHPNS YFMDVKCSGC FKISTVFSHA
60 70 80
TTVVVCVGCN TVLCQPTRGK AKLTEGCSFR KKQ
Length:83
Mass (Da):9,347
Last modified:January 23, 2007 - v3
Checksum:i871735EE9684C523
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081492 Genomic DNA Translation: CCD71974.1
PIRiG88921
RefSeqiNP_503134.1, NM_070733.5
UniGeneiCel.17980

Genome annotation databases

EnsemblMetazoaiF56E10.4.1; F56E10.4.1; WBGene00004496
F56E10.4.2; F56E10.4.2; WBGene00004496
GeneIDi178538
KEGGicel:CELE_F56E10.4
UCSCiF56E10.4.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRS27_CAEEL
AccessioniPrimary (citable) accession number: Q9TXP0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: January 23, 2007
Last modified: February 28, 2018
This is version 115 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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